Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036641 [exp] 70 / 3e-16 ND / Lus10036295 [exp] 68 / 6e-15 ND / Lus10009869 [exp] 66 / 9e-15 ND / Lus10001186 [exp] 66 / 2e-13 ND / Lus10016933 [exp] 62 / 2e-13 ND / Lus10021734 [exp] 61 / 5e-13 ND / Lus10010841 [exp] 60 / 2e-11 AT2G37640 373 / 6e-127 ARABIDOPSIS THALIANA EXPANSIN A3, EXPANSIN 3, Barwin-like endoglucanases superfamily protein (.1) Lus10006503 [exp] 60 / 2e-11 ND / Lus10007182 [exp] 57 / 2e-11 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011078 pacid=23165730 polypeptide=Lus10011078 locus=Lus10011078.g ID=Lus10011078.BGIv1.0 annot-version=v1.0 ATGATGCATTGTGTAGGAGTTATTCTGCAGAAATCAAGCACACATCAACTTCTATTGCATCAAATGGATCTAATTCGAGTGCTTGGTTTGAGTTCAAGCA ACACACAAATTCTTTTCCCTCCTAGAGTTCAAGTCGATGACTGGTTCATGCGACAGTTTGCGAAACTTATGCTTGCAAAGTTTGATAAGCAAAGTGGTAC TCTCTCTCCTAAGTTGCATCAAAAAGGAAAGAAGGTTCTGCACCGGGCTCATCTGGAGCTTCTGGATCATTGGGAGCTTTCAAAGGAAGGAGACATGACG ATAGCAGCCCGCCCGATGAGTCTGAGGAGGAGGAGGAGGATATTGAAGATGAGTAGGTCGTTAGTAGGTTATGTTATTAGTATATTATTGTCTTTCTAA
AA sequence Show only first row Show all	>Lus10011078 pacid=23165730 polypeptide=Lus10011078 locus=Lus10011078.g ID=Lus10011078.BGIv1.0 annot-version=v1.0 MMHCVGVILQKSSTHQLLLHQMDLIRVLGLSSSNTQILFPPRVQVDDWFMRQFAKLMLAKFDKQSGTLSPKLHQKGKKVLHRAHLELLDHWELSKEGDMT IAARPMSLRRRRRILKMSRSLVGYVISILLSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10011078 [exp]	0	1
AT5G22450			unknown protein		Lus10000530 [exp]	1.7	1.0000
					Lus10011642 [exp]	2.2	1.0000
					Lus10022214 [exp]	2.4	1.0000
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10003908 [exp]	3.0	1.0000
					Lus10027991 [exp]	3.2	1.0000
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10013028 [exp]	3.3	1.0000
					Lus10003536 [exp]	3.5	1.0000
					Lus10035592 [exp]	4.7	1.0000
AT5G54010			UDP-Glycosyltransferase superf...		Lus10039237 [exp]	4.9	1.0000
AT2G20420			ATP citrate lyase (ACL) family...		Lus10022902 [exp]	5.3	1.0000

Compare expression of checked genes

Lus10011078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.