Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37530 480 / 1e-171 Peroxidase superfamily protein (.1.2) AT5G67400 476 / 5e-170 RHS19 root hair specific 19 (.1) AT4G37520 470 / 1e-167 Peroxidase superfamily protein (.1.2) AT3G49960 457 / 2e-162 Peroxidase superfamily protein (.1) AT2G18980 442 / 7e-157 Peroxidase superfamily protein (.1) AT4G30170 437 / 5e-155 Peroxidase family protein (.1) AT5G14130 345 / 2e-118 Peroxidase superfamily protein (.1) AT5G47000 285 / 5e-95 Peroxidase superfamily protein (.1) AT4G17690 282 / 1e-93 Peroxidase superfamily protein (.1) AT2G34060 260 / 6e-85 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001442 [exp] 428 / 4e-151 AT4G30170 475 / 7e-170 Peroxidase family protein (.1) Lus10012540 [exp] 366 / 2e-126 AT5G14130 384 / 5e-134 Peroxidase superfamily protein (.1) Lus10032035 [exp] 358 / 2e-123 AT5G67400 394 / 3e-138 root hair specific 19 (.1) Lus10001622 [exp] 280 / 6e-93 AT2G18980 320 / 4e-109 Peroxidase superfamily protein (.1) Lus10010716 [exp] 280 / 1e-92 AT1G24110 407 / 4e-143 Peroxidase superfamily protein (.1) Lus10042144 [exp] 273 / 7e-90 AT1G24110 390 / 2e-136 Peroxidase superfamily protein (.1) Lus10004234 [exp] 271 / 3e-89 AT1G24110 391 / 1e-136 Peroxidase superfamily protein (.1) Lus10035204 [exp] 266 / 3e-88 AT5G67400 270 / 5e-90 root hair specific 19 (.1) Lus10039445 [exp] 268 / 4e-88 AT5G40150 467 / 8e-167 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G053400 [exp] 518 / 0 AT5G67400 471 / 4e-168 root hair specific 19 (.1) Potri.018G089900 [exp] 447 / 6e-159 AT4G30170 472 / 6e-169 Peroxidase family protein (.1) Potri.017G064100 [exp] 402 / 7e-141 AT5G67400 372 / 2e-129 root hair specific 19 (.1) Potri.001G329200 [exp] 393 / 2e-137 AT4G37530 392 / 4e-137 Peroxidase superfamily protein (.1.2) Potri.007G074700 [exp] 299 / 2e-100 AT5G47000 358 / 8e-124 Peroxidase superfamily protein (.1) Potri.012G076500 [exp] 283 / 5e-94 AT4G17690 423 / 1e-149 Peroxidase superfamily protein (.1) Potri.010G036100 [exp] 276 / 2e-91 AT1G24110 400 / 2e-140 Peroxidase superfamily protein (.1) Potri.005G108900 [exp] 261 / 1e-85 AT5G42180 442 / 2e-157 peroxidase 64, Peroxidase superfamily protein (.1) Potri.004G052100 [exp] 261 / 4e-85 AT2G34060 458 / 1e-162 Peroxidase superfamily protein (.1) Potri.001G351000 [exp] 257 / 5e-84 AT3G28200 448 / 2e-159 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10011079 pacid=23165729 polypeptide=Lus10011079 locus=Lus10011079.g ID=Lus10011079.BGIv1.0 annot-version=v1.0 ATGGGGCGGAGGCGGCGGCGACAGCTCCTGATCATCAGCAGCAATAACATGAATCTGGTGATGGCGATTACCCTGGCGGGCTTTCTCCTATTCTCAGCTC CCGCAGCGGCACAGCTCAGACAGAACTACTACGCCAATGTGTGCCCAAATGTTGAGGGTATAGTAAGAGCCGCCGTCCAGAAGAAGATTCAGCAGACATT CGTCACCATCCCGGCCACCATCCGCCTCTTCTTCCATGATTGCTTTGTCCAGGGATGTGATGCGTCGGTGATAGTGGCGTCGACGGGGAGCAACAAGGCG GAGAAGGACCATCCTGACAACCTGTCGCTAGCCGGAGATGGGTTCGACACAGTGATAAAGGCAAAGCAGGCGGTTGATGCGGTGGCAGGGTGCAGGAACA AGGTCTCTTGCGCTGATATTCTTGCTTTGGCCACTAGAGACGTTATTGCTTTGTCGGGAGGACCAACGTACGCCGTGGAACTGGGGAGACTGGACGGATT GAGCTCAACGGCTGGGAGTGTGAACGGAAGGCTGCCGCAGCCCAATTTTACCCTAAACCAACTCAACTCCCTCTTCGCTGCTAACGGACTCTCCCAGTCT GACATGATCGCTCTCTCTGCTGCTCATACCGTCGGATTCTCCCACTGTGGGAAATTCGCAAATAGGATATACAACTTCAGCCGCGGGAACTCGGTGGACC CAACTCTTAACCCGGGATACGCGACCCGGCTCCAGCAGATGTGCCCGAGGAACGTTGACCCGAGGATAGCCATCAACATGGATCCCTTCACACCTAACAC CTTCGACAACACATACTTCAAGAACCTCCAGCAAGGCATGGGCCTTTTCACATCTGACCAGATCCTCTTCACGGACACCAGGTCCAAGCCCACTGTCGAC TCATGGGCCACCAATTCCTTCGCATTTCAGCAGGCTTTCATCAATGCTATCACTAAGCTGGGTCGGGTCGGTGTCAAAACGGGGAAGAACGGAAATATCC GGACCGATTGTGGTGTTCTGGGCTGA
AA sequence Show only first row Show all	>Lus10011079 pacid=23165729 polypeptide=Lus10011079 locus=Lus10011079.g ID=Lus10011079.BGIv1.0 annot-version=v1.0 MGRRRRRQLLIISSNNMNLVMAITLAGFLLFSAPAAAQLRQNYYANVCPNVEGIVRAAVQKKIQQTFVTIPATIRLFFHDCFVQGCDASVIVASTGSNKA EKDHPDNLSLAGDGFDTVIKAKQAVDAVAGCRNKVSCADILALATRDVIALSGGPTYAVELGRLDGLSSTAGSVNGRLPQPNFTLNQLNSLFAANGLSQS DMIALSAAHTVGFSHCGKFANRIYNFSRGNSVDPTLNPGYATRLQQMCPRNVDPRIAINMDPFTPNTFDNTYFKNLQQGMGLFTSDQILFTDTRSKPTVD SWATNSFAFQQAFINAITKLGRVGVKTGKNGNIRTDCGVLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37530			Peroxidase superfamily protein...		Lus10011079 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10026173 [exp]	12.5	0.8801
					Lus10021499 [exp]	13.4	0.8364
AT2G33580			Protein kinase superfamily pro...		Lus10039406 [exp]	16.8	0.8317
AT4G40020			Myosin heavy chain-related pro...		Lus10000283 [exp]	24.2	0.8264
AT4G21970			Protein of unknown function, D...		Lus10021536 [exp]	26.3	0.8605
AT1G70690		HWI1, PDLP5	PLASMODESMATA-LOCATED PROTEIN ...		Lus10030779 [exp]	28.0	0.7854
					Lus10022600 [exp]	31.7	0.8278
AT2G47730		GST6, ATGSTF5, ...	Arabidopsis thaliana glutathio...		Lus10026643 [exp]	33.6	0.8509
AT3G14460			LRR and NB-ARC domains-contain...		Lus10029705 [exp]	36.6	0.8035
AT3G44350	NAC	ANAC061	NAC domain containing protein ...		Lus10004206 [exp]	41.7	0.7873

Compare expression of checked genes

Lus10011079 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.