Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67390 74 / 3e-16 unknown protein AT1G69360 53 / 5e-08 Plant protein of unknown function (DUF863) (.1) AT1G26620 52 / 7e-08 Plant protein of unknown function (DUF863) (.1) AT1G13940 49 / 1e-06 Plant protein of unknown function (DUF863) (.1) AT5G07790 45 / 1e-05 unknown protein AT5G57340 41 / 0.0002 unknown protein AT5G61300 40 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019291 [exp] 108 / 3e-29 AT5G67390 95 / 2e-24 unknown protein Lus10011531 [exp] 105 / 2e-28 AT5G67390 97 / 3e-25 unknown protein Lus10014857 [exp] 48 / 3e-07 ND 39 / 3e-04 Lus10037122 [exp] 49 / 8e-07 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1) Lus10036807 [exp] 47 / 5e-06 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G053300 [exp] 115 / 3e-32 AT5G67390 100 / 3e-26 unknown protein Potri.005G145800 [exp] 104 / 8e-28 AT5G67390 87 / 1e-21 unknown protein Potri.018G090000 [exp] 53 / 2e-08 AT5G57340 72 / 8e-15 unknown protein Potri.004G125900 [exp] 50 / 3e-07 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1) Potri.008G092800 [exp] 46 / 7e-06 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1) Potri.010G162000 [exp] 46 / 7e-06 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1) Potri.017G088900 [exp] 46 / 7e-06 AT1G69360 152 / 2e-37 Plant protein of unknown function (DUF863) (.1) Potri.003G112000 [exp] 43 / 8e-05 AT1G62530 109 / 4e-26 Plant protein of unknown function (DUF863) (.1), Plant protein of unknown function (DUF863) (.2) Potri.018G020800 [exp] 42 / 0.0001 AT1G69360 54 / 2e-07 Plant protein of unknown function (DUF863) (.1) Potri.006G165500 [exp] 41 / 0.0002 AT5G57340 62 / 2e-11 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011080 pacid=23165727 polypeptide=Lus10011080 locus=Lus10011080.g ID=Lus10011080.BGIv1.0 annot-version=v1.0 ATGGAGAGAGTTGTGAAGCCTTATGACAAAGAATACATGAGGCTGGCAATGTTAAAGCATGAAGAGACATTCAAAGAACAGGTATTTGAACTTCATCGGC TATACAGAATCCAGAAACTGCTGATGAGAACCATTGGTAAAACTAACAACTATCACCATCAGGGGTTGTGGAACTCTTCCAGGAATGGTTTCAGTTTCAA CCCCAACACTCACAACAATACCAGTAGTCCTGCTGAGAAGTTAGTAATGAAGCTGGACTTGGAGAGGCCAGCAGAGGAGTTTGCAGAATCCTCAGTACTG GAGGAGAGTGAGATTGAACTAACGCTTGGACCAGCAAGTTATTCAAGGAGCAAGAAACTTGCTGAAACGCCCTTGAGTTCAGAATTAGCAGGGGAAAGCT TGTCTTCTTCATCAACAGGGTCAAGTCATATTGACATGAAGAGGAGGAACAGCAAAGCTATAGAGGAAGGATTCAGAAGGACCTTCCAAGCTGAAACTGG AATTAGCAGACAGAAAGATGGAAGTAGTACTAGTAATGTTGATAATGAAGAGCAGGATATATTAAAGCAGCAGCTTCCATGGCTCTCTCAGGTCTTGACC CTCAATATGACTTAA
AA sequence Show only first row Show all	>Lus10011080 pacid=23165727 polypeptide=Lus10011080 locus=Lus10011080.g ID=Lus10011080.BGIv1.0 annot-version=v1.0 MERVVKPYDKEYMRLAMLKHEETFKEQVFELHRLYRIQKLLMRTIGKTNNYHHQGLWNSSRNGFSFNPNTHNNTSSPAEKLVMKLDLERPAEEFAESSVL EESEIELTLGPASYSRSKKLAETPLSSELAGESLSSSSTGSSHIDMKRRNSKAIEEGFRRTFQAETGISRQKDGSSTSNVDNEEQDILKQQLPWLSQVLT LNMT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67390			unknown protein		Lus10011080 [exp]	0	1
AT5G62360			Plant invertase/pectin methyle...		Lus10027199 [exp]	2.4	0.8636
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Lus10004118 [exp]	2.4	0.8702
AT1G52240		PIRF1, ATROPGEF...	phytochrome interacting RopGEF...		Lus10037551 [exp]	2.8	0.8664
AT2G27310			F-box family protein (.1)		Lus10028024 [exp]	4.5	0.8552
AT4G31020			alpha/beta-Hydrolases superfam...		Lus10040038 [exp]	6.0	0.8480
AT5G55760		SRT1	sirtuin 1 (.1)		Lus10016619 [exp]	9.7	0.8503
AT3G29270			RING/U-box superfamily protein...		Lus10003473 [exp]	9.8	0.8354
AT2G25710		HCS1	holocarboxylase synthase 1 (.1...		Lus10025604 [exp]	10.6	0.8374
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10025232 [exp]	11.0	0.8252
AT4G40080			ENTH/ANTH/VHS superfamily prot...		Lus10002643 [exp]	14.3	0.7384

Compare expression of checked genes

Lus10011080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.