Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67385 476 / 2e-162 Phototropic-responsive NPH3 family protein (.1) AT3G49970 454 / 9e-155 Phototropic-responsive NPH3 family protein (.1) AT5G48800 365 / 7e-119 Phototropic-responsive NPH3 family protein (.1) AT1G03010 350 / 6e-113 Phototropic-responsive NPH3 family protein (.1) AT2G30520 337 / 2e-108 RPT2 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) AT1G30440 311 / 8e-98 Phototropic-responsive NPH3 family protein (.1) AT3G08660 308 / 2e-97 Phototropic-responsive NPH3 family protein (.1) AT5G64330 297 / 2e-91 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT5G03250 292 / 3e-91 Phototropic-responsive NPH3 family protein (.1) AT5G66560 288 / 6e-89 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014858 [exp] 649 / 0 AT5G67385 489 / 2e-168 Phototropic-responsive NPH3 family protein (.1) Lus10011532 [exp] 406 / 8e-137 AT5G67385 427 / 2e-144 Phototropic-responsive NPH3 family protein (.1) Lus10019290 [exp] 378 / 1e-125 AT5G67385 402 / 6e-135 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 366 / 3e-119 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10013057 [exp] 352 / 4e-114 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Lus10029102 [exp] 352 / 5e-114 AT2G30520 825 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Lus10005943 [exp] 339 / 2e-108 AT1G03010 881 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 323 / 3e-102 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 313 / 2e-98 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G053200 [exp] 649 / 0 AT5G67385 807 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 404 / 3e-134 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G139900 [exp] 393 / 5e-130 AT3G08570 723 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G209700 [exp] 388 / 1e-127 AT1G03010 847 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.014G133500 [exp] 380 / 3e-124 AT1G03010 843 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.019G131600 [exp] 352 / 2e-114 AT2G30520 821 / 0.0 ROOT PHOTOTROPISM 2, Phototropic-responsive NPH3 family protein (.1.2.3) Potri.016G090400 [exp] 323 / 1e-102 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 317 / 2e-100 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G112600 [exp] 318 / 4e-100 AT5G64330 989 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.008G038600 [exp] 315 / 1e-99 AT5G03250 723 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain CL0033 [flax] [poplar] PF03000 [flax] [poplar] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Lus10011082 pacid=23165724 polypeptide=Lus10011082 locus=Lus10011082.g ID=Lus10011082.BGIv1.0 annot-version=v1.0 ATGTCTAAAAAGGAGCTTCTTTCCTCTGCTATGAAGAGAACAGGCGAATGGATTTTCTCTCAGGAATTCTCCAGTGAAGTTACTGTCTATGTTGGTGGAA CGTCTTTTTCTTTGCATAAGTTTCCCTTAGTATCGAAGTCAGGCTACATTAGAAAGCTAGTGTCAGAAAGCAATGATGCTGATCCTTCGGAGGTTCATAT ACCTGAAATACCTGGCGGTCCAGAAGCGTTTGAACTTGCTGCAAAGTTCTGCTACGGAATCAACTTTGAGATAGGCACAGGGAACATTGCTGTCCTTCGA TGCGTGGCAGAGTATCTGGAGATGACGGAGGACTTTGCAGTTGGGAATTTGGTGTCAAGAGCAGAAGCCTATCTAAATGAAGTTACTCTCAAGAGCCTCA CTGGTGCAATTTCAGTACTGAACCAATCACAAAGTCTGGGTCCTATTGCAGAACAAGTAAAATTGGTGAGCCGATGCATAGATGCAATAGCATTAATGAC CTGCATGGAAAGCCAACTCTCTATTGCAGCAGGCAGGACTGATGGTCTCATTGATGGCTTGCTTTCTTCCAGAGTCTCACACTCCAAGCCCATAGTTGAT TGTCTGGGTCCTATTGCAGAACAAGTAAAATTGGTGAGCCGATGCATAGATGCAATAGCATTAATGACCTGCATGGAAAGCCAACTCTCTATTGCAGCAG GCAGGACTGATGGTCTCATTGATGGCTTGCTTTCTTCCAGAGTCTCACACTCCAAGCCCATAGTTGATTGGTGGGCTGAAGATTTAACTGCTCTCAGAAT TGATATATTTCAAAGAGTTTTTATTGCAATGGTAGCAAGAGGATTCAAGCAGTATGCTCTTGGCCCTGTACTTATGCTCTATGCACAAAAATCCCTGCGA GGTTTGGAGACATTTGGTACGGGGAGAAAAAGGATTGAGGCTGCTAAACAAGAGCATGAGAGATGCGTGGTTCTAGAAACTATAGTTAGCCTTCTGCCAA AGGAGAAACATGCATTGTCTATTAGCTTCCTGTCTATGCTGCTTCGAGCTGCAATCTATCTGGAGACAACTGTTGCTTGCCGGCTTGATTTGGAGACGAG GATGGCATCACAATTAGGCCAAGCTGTGTTGGATGACCTGTTGATCCCTGCAAATTCGTTTACAGGGGACACACTCTATGACGTGGATACAGTTAAGCGG ATCATGATGAACTATATTGAATGTGAAGTGGAAGGTAACAAATCAGGCTACTATGCATATGGTGAATACTTTTCTCCTCCTCTAACTGACATGGAGAGAG TTGGCAAACTGATGGAGAACTACCTAGCTGAAATCGCCTCTGACCACATGGCAGTTTCTAAGTTCATTACTCTTACTGAACATGTCGCAGAGCAATCAAG AACCGCAGAAGATGGAATGTATAGAGCCATTGACATATACCTGAAGGCTCATCCTGAGTTGAGCGACATGGAGAGGAAGAAGGTTTGCTGTGTAATGGAC TGCCAGAAACTATCTCGAGAAGCCTGCGCTCACGCTGCACAGAATGACAGGCTTCCAGCTCAGACAGTGGTTCAAGTTCTTTACTTCGAGCAACAGCGCC TCCAAGATGTCAAGAATAATTCGGGGGATCAATCCACTCCCAGGGTTCCACTCTACTCCACTGACATCCAAACGGTTTCTGATGAACTGTCCAGCTTAAA AAGGGAGAACCCAAGACCTGAAATTTGA
AA sequence Show only first row Show all	>Lus10011082 pacid=23165724 polypeptide=Lus10011082 locus=Lus10011082.g ID=Lus10011082.BGIv1.0 annot-version=v1.0 MSKKELLSSAMKRTGEWIFSQEFSSEVTVYVGGTSFSLHKFPLVSKSGYIRKLVSESNDADPSEVHIPEIPGGPEAFELAAKFCYGINFEIGTGNIAVLR CVAEYLEMTEDFAVGNLVSRAEAYLNEVTLKSLTGAISVLNQSQSLGPIAEQVKLVSRCIDAIALMTCMESQLSIAAGRTDGLIDGLLSSRVSHSKPIVD CLGPIAEQVKLVSRCIDAIALMTCMESQLSIAAGRTDGLIDGLLSSRVSHSKPIVDWWAEDLTALRIDIFQRVFIAMVARGFKQYALGPVLMLYAQKSLR GLETFGTGRKRIEAAKQEHERCVVLETIVSLLPKEKHALSISFLSMLLRAAIYLETTVACRLDLETRMASQLGQAVLDDLLIPANSFTGDTLYDVDTVKR IMMNYIECEVEGNKSGYYAYGEYFSPPLTDMERVGKLMENYLAEIASDHMAVSKFITLTEHVAEQSRTAEDGMYRAIDIYLKAHPELSDMERKKVCCVMD CQKLSREACAHAAQNDRLPAQTVVQVLYFEQQRLQDVKNNSGDQSTPRVPLYSTDIQTVSDELSSLKRENPRPEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10011082 [exp]	0	1
AT5G67385			Phototropic-responsive NPH3 fa...		Lus10011081 [exp]	1.0	0.9732
AT5G02440			unknown protein		Lus10025345 [exp]	1.4	0.9045
					Lus10018660 [exp]	3.0	0.8692
AT5G13790	MADS	AGL15	AGAMOUS-like 15 (.1)		Lus10039580 [exp]	4.5	0.8387
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10026369 [exp]	5.5	0.8039
AT3G43600		AtAO3, atAO-2, ...	Arabidopsis thaliana aldehyde ...		Lus10023586 [exp]	6.0	0.8385
AT5G02440			unknown protein		Lus10024400 [exp]	7.5	0.8599
AT5G22350		ELM1	ELONGATED MITOCHONDRIA 1, Prot...		Lus10021334 [exp]	14.1	0.7908
AT5G50150			Protein of Unknown Function (D...		Lus10042092 [exp]	18.0	0.8178
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10018435 [exp]	21.3	0.8374

Compare expression of checked genes

Lus10011082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.