Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G23093 486 / 3e-170 Major facilitator superfamily protein (.1) AT3G49310 130 / 3e-33 Major facilitator superfamily protein (.1) AT4G27720 124 / 5e-31 Major facilitator superfamily protein (.1) AT1G64650 119 / 3e-29 Major facilitator superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014854 [exp] 801 / 0 AT2G23093 499 / 2e-175 Major facilitator superfamily protein (.1) Lus10033228 [exp] 108 / 1e-25 AT1G64650 835 / 0.0 Major facilitator superfamily protein (.1.2) Lus10003219 [exp] 105 / 2e-24 AT1G64650 821 / 0.0 Major facilitator superfamily protein (.1.2) Lus10017322 [exp] 104 / 1e-23 AT1G64650 799 / 0.0 Major facilitator superfamily protein (.1.2) Lus10000337 [exp] 52 / 7e-08 AT1G64650 308 / 2e-105 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G052700 [exp] 570 / 0 AT2G23093 425 / 3e-146 Major facilitator superfamily protein (.1) Potri.012G020500 [exp] 125 / 3e-31 AT4G27720 761 / 0.0 Major facilitator superfamily protein (.1) Potri.015G008100 [exp] 122 / 4e-30 AT4G27720 827 / 0.0 Major facilitator superfamily protein (.1) Potri.003G145600 [exp] 117 / 2e-28 AT1G64650 831 / 0.0 Major facilitator superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF05631 [flax] [poplar] MFS_5 Sugar-tranasporters, 12 TM
Representative CDS sequence Show only first row Show all	>Lus10011083 pacid=23165736 polypeptide=Lus10011083 locus=Lus10011083.g ID=Lus10011083.BGIv1.0 annot-version=v1.0 ATGGTGGTTGGGGTAATCGAGAGCTCCTTCTGGTTGCCAAATGTTTCGCTCTTCGGTTTCATTTTCATTTGCTGCTTCTTCTCCATTAGTCTCTTACCTC AAGCCTCCAAGACTAATCGATCGCTCGGCCCTTTGGACAATGCCGCTTCTTCTTCCTTTTCTTCTCCAACCTCCGCCTTCCTCCGCTTCCAGCGGAAGTT CCTGCTCATCTACTCTCTAGCATCAGTGATGGAAGGGTTGTGGGCGGTGTTTGGAGAGTACGAATTGGCATTTTATGGAGTCAGCAAGGAGCAGATGGTC ACGTCTCTTTCTGTCGGTTATGGGGCTTCCTTGATTGTTGGTACTTTCTTAGGAATGGTTTCTGATTCAATCGGTCACAAGAAAGCCTGCTTGATCTTTT GCGTTCTACATCTCTTTGTTGGTGTGTGGAAGAAAATTGCACCTCACCCTAGTCTCTGGCTAGCAAGCATATGCCTGTCGCTTTCTACCTCGATATATTC CTTCAGTTTCGACTCATGGCTTGCTGTCGAAAATGAAAAGCAAGGATACAGGCAAGACACTTTGAGTGACACGTTTTGGTTGATGACTTTCTTTGAGTCC GTATCGTTCATTCTAAGCCAAGTCACTGCCAATTGGCTGCTAGGGAGTTATGCGGGGAATGGTCTAGTATCTTCTTCCACTGCTTCCATCCTTCTATCAG TCTTGAGCATCATATGTGTTAGCAATGATTGGAAGGAAACCCCAGAAACTGCAGTAACCAAGGATTATAATGTTTCTTATGCACATATTTTCAAAGACAA ACGGATATTGCTCCTAGGATTTGCACATGCTTGCCTCCAGTTCTCCATTGCAATCTTCTGGCTTTTGTGGGCTCCAACTCTGGTGGCTGATGGGCGAGAA GTACATCTGGCACTAGTATATCCCTGCTTATTGGGTGCAAGAATGTTGGGAAGCACCATATTCCCTTGGCTGTTGACTGGTCCTTCATCTCTTCGTACAG AGGATTGTCTTATGTATGCATTTGTTGTACTTGGGATCTCCTTGTCTGTAATTGCATATGATTACCAGGAAATTGCAGTTTTGGTGTCCCTATTTTGCTT ATTCCATGCTGTTGTGGGGTTTATTATTCCTTCCCTTGCTAGATTGAGGACCATGCATGTCCCAAACGAGTTACGTGGAGGGATGATTGCCCTATCTCTA GCTCCTGCGCATGCAACAATACTATTGATGTTGGTGCAAAGAGGTTACTACGAGAGCATTGAGAATTCAACAATGATAGCAGTTGCGTCGCTGGGGCTGT TTGCATCAGCTGCTTCCATGTATCTACTGAAGCAGTGGGGAAAGCAACCTTACCAGAACTGGCACAAGATGTGA
AA sequence Show only first row Show all	>Lus10011083 pacid=23165736 polypeptide=Lus10011083 locus=Lus10011083.g ID=Lus10011083.BGIv1.0 annot-version=v1.0 MVVGVIESSFWLPNVSLFGFIFICCFFSISLLPQASKTNRSLGPLDNAASSSFSSPTSAFLRFQRKFLLIYSLASVMEGLWAVFGEYELAFYGVSKEQMV TSLSVGYGASLIVGTFLGMVSDSIGHKKACLIFCVLHLFVGVWKKIAPHPSLWLASICLSLSTSIYSFSFDSWLAVENEKQGYRQDTLSDTFWLMTFFES VSFILSQVTANWLLGSYAGNGLVSSSTASILLSVLSIICVSNDWKETPETAVTKDYNVSYAHIFKDKRILLLGFAHACLQFSIAIFWLLWAPTLVADGRE VHLALVYPCLLGARMLGSTIFPWLLTGPSSLRTEDCLMYAFVVLGISLSVIAYDYQEIAVLVSLFCLFHAVVGFIIPSLARLRTMHVPNELRGGMIALSL APAHATILLMLVQRGYYESIENSTMIAVASLGLFASAASMYLLKQWGKQPYQNWHKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G23093			Major facilitator superfamily ...		Lus10011083 [exp]	0	1
AT1G60070			Adaptor protein complex AP-1, ...		Lus10029177 [exp]	6.1	0.9055
AT3G43300		BEN1, ATMIN7	BFA-VISUALIZED ENDOCYTIC TRAFF...		Lus10038084 [exp]	10.9	0.8991
AT3G08530			Clathrin, heavy chain (.1)		Lus10037845 [exp]	14.1	0.8905
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021680 [exp]	15.4	0.8896
AT3G60860			SEC7-like guanine nucleotide e...		Lus10009300 [exp]	16.9	0.8842
AT3G08530			Clathrin, heavy chain (.1)		Lus10028976 [exp]	17.8	0.8839
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037962 [exp]	20.6	0.8788
AT3G55410			2-oxoglutarate dehydrogenase, ...		Lus10005961 [exp]	21.0	0.8743
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10043474 [exp]	23.2	0.8782
AT2G45540			WD-40 repeat family protein / ...		Lus10015858 [exp]	23.7	0.8772

Compare expression of checked genes

Lus10011083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.