Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33910 228 / 4e-74 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G23096 164 / 4e-49 P4H13 prolyl 4-hydroxylase 13, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G20270 105 / 2e-26 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G66060 101 / 4e-25 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT2G17720 100 / 1e-24 P4H5 prolyl 4-hydroxylase 5, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G35810 94 / 3e-22 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G28490 93 / 5e-22 Oxoglutarate/iron-dependent oxygenase (.1) AT3G28480 88 / 7e-20 Oxoglutarate/iron-dependent oxygenase (.1.2) AT2G43080 85 / 6e-19 AT-P4H-1 P4H isoform 1 (.1) AT3G06300 84 / 9e-19 P4H2, AT-P4H-2 prolyl 4-hydroxylase 2, P4H isoform 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028404 [exp] 110 / 3e-28 AT5G66060 486 / 8e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10041857 [exp] 108 / 1e-27 AT5G66060 488 / 2e-176 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10012014 [exp] 93 / 1e-21 AT5G18900 448 / 2e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10016271 [exp] 93 / 1e-21 AT5G18900 444 / 2e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032183 [exp] 90 / 1e-20 AT3G28480 434 / 3e-154 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10014502 [exp] 89 / 2e-20 AT3G28480 398 / 4e-140 Oxoglutarate/iron-dependent oxygenase (.1.2) Lus10031048 [exp] 87 / 4e-20 AT2G43080 406 / 7e-145 P4H isoform 1 (.1) Lus10005620 [exp] 89 / 5e-20 AT1G20270 465 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10017249 [exp] 88 / 9e-20 AT1G20270 455 / 3e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G052600 [exp] 245 / 1e-80 AT4G33910 353 / 4e-123 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G296800 [exp] 234 / 2e-76 AT4G33910 441 / 6e-158 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.009G091000 [exp] 218 / 4e-70 AT4G33910 431 / 9e-154 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G245300 [exp] 104 / 4e-26 AT1G20270 483 / 3e-174 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.005G108000 [exp] 97 / 1e-23 AT5G66060 405 / 1e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.007G060800 [exp] 95 / 2e-22 AT5G66060 349 / 6e-121 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.008G197700 [exp] 92 / 1e-21 AT5G18900 448 / 3e-160 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G232100 [exp] 91 / 3e-21 AT2G43080 456 / 4e-164 P4H isoform 1 (.1) Potri.017G075300 [exp] 90 / 8e-21 AT3G28480 345 / 5e-120 Oxoglutarate/iron-dependent oxygenase (.1.2) Potri.017G075100 [exp] 89 / 3e-20 AT3G28480 436 / 3e-155 Oxoglutarate/iron-dependent oxygenase (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011085 pacid=23165720 polypeptide=Lus10011085 locus=Lus10011085.g ID=Lus10011085.BGIv1.0 annot-version=v1.0 ATGAAACCCGTCAAACCTTCCAGGGCCCACTTCTTCCTCAAGCTTAGAGGGAAGTTAGGGTTACCTGCCATCTTCATTTGCTTCTTGTTCTTCTTCCTCG CCGGCCTTTTTGCCTCCAATCTTATCTCTCAGGAGGATCCTGGTCTGACGTCCAACTCCCGTAAGCTGCAGTCTTCGTTGCTGGAGACGAAGAAATTCGA GTACAATTTACTCCCTCCGGGACAGTCTGGCGATGATTCCATCACGCTTATCCCTTTCCAGGTCCTGAGCTGGAAACCTCGTGCTTTGTACTTTCCCAAC TTTGCCTCTGCAGAGCAATGTGAAAGTATAATTAGTATGGCAAAGCCACATCTAAAGCCGTCAACTTTGGCTTTACGCAAGGGAGAAACAGAAGAGAGTA CGGAGGGAGTAAGAACAAGCTCTGGTGTGTTCCTCAGTTCTTCTGAAGATGACACAGGCGTCTTGGATGTGATCGAAGAAAAAATTGCTAGAGCGAGTAT GATTCCAAGGGCCCATGGAGAGGCATTCAATATTCTTCGTTATGAGGTTGGCCAAAAGTATGATTCTCACTATGATGCGTTCAATCCTTCAGAATATGGT CCACAAAAGAGTCAACGGATAACTTATATTCCATACATGAATTTGCTGGTCCACAACAACATGAATACCTGTAAAATCAGCCTTATGGAAGGCGCGATTA GGCGTCCGCCTAGACGAGAAAAACCCCAAGGCACCGGCAAAACGCCTCGCCTCGGGCAAGGCGATGAAATAAGGATGTCGACCGAAGAATCACTAAGGAA GAGCGAAATCGATGAGGGATCGATTTCCTGCGACGCCGAGGCGGCGAAATCTGCTATTAGGCGTTAA
AA sequence Show only first row Show all	>Lus10011085 pacid=23165720 polypeptide=Lus10011085 locus=Lus10011085.g ID=Lus10011085.BGIv1.0 annot-version=v1.0 MKPVKPSRAHFFLKLRGKLGLPAIFICFLFFFLAGLFASNLISQEDPGLTSNSRKLQSSLLETKKFEYNLLPPGQSGDDSITLIPFQVLSWKPRALYFPN FASAEQCESIISMAKPHLKPSTLALRKGETEESTEGVRTSSGVFLSSSEDDTGVLDVIEEKIARASMIPRAHGEAFNILRYEVGQKYDSHYDAFNPSEYG PQKSQRITYIPYMNLLVHNNMNTCKISLMEGAIRRPPRREKPQGTGKTPRLGQGDEIRMSTEESLRKSEIDEGSISCDAEAAKSAIRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Lus10011085 [exp]	0	1
AT4G18270		ATTRANS11	ARABIDOPSIS THALIANA TRANSLOCA...		Lus10038493 [exp]	12.3	0.6840
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Lus10021803 [exp]	13.0	0.7399
AT5G53870		AtENODL1	early nodulin-like protein 1 (...		Lus10009196 [exp]	20.6	0.6383
AT4G24620		PGI1	phosphoglucose isomerase 1 (.1...		Lus10015959 [exp]	29.8	0.7147
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10006078 [exp]	30.0	0.7112
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	30.4	0.7260
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10000817 [exp]	35.0	0.7387
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Lus10028917 [exp]	41.0	0.7021
AT1G29050		TBL38	TRICHOME BIREFRINGENCE-LIKE 38...		Lus10000988 [exp]	56.6	0.6851
AT5G40450			unknown protein		Lus10022266 [exp]	59.9	0.7129

Compare expression of checked genes

Lus10011085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.