Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67370 385 / 9e-135 Protein of unknown function (DUF1230) (.1) AT5G11840 147 / 2e-42 Protein of unknown function (DUF1230) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039247 [exp] 148 / 1e-42 AT5G11840 287 / 1e-97 Protein of unknown function (DUF1230) (.1) Lus10027492 [exp] 108 / 5e-29 AT5G11840 155 / 3e-48 Protein of unknown function (DUF1230) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G052500 [exp] 402 / 2e-141 AT5G67370 391 / 3e-137 Protein of unknown function (DUF1230) (.1) Potri.006G229600 [exp] 151 / 3e-44 AT5G11840 303 / 4e-104 Protein of unknown function (DUF1230) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06799 [flax] [poplar] DUF1230 Conserved in the green lineage and diatoms 27
Representative CDS sequence Show only first row Show all	>Lus10011087 pacid=23165723 polypeptide=Lus10011087 locus=Lus10011087.g ID=Lus10011087.BGIv1.0 annot-version=v1.0 ATGCTCCGTCTAAGTATCTACTGCCCTCCTCCTCGAGCAATCGGATGCAGCAACACATGTACTAGGAGTAGGTGGCTGCAGCTAATCAAGTACCATAAAT CCCACAACCCAATTCGCAGGAATTTTGCCTTGAAAGATGGAGGAGGTGCAGATGGAGGCACAAGCAGTTTCCAAGGCAGAAGCTGGCAACCTGACTCCGA CGTTGGGGTCCCTTTTGAACAAAGACCGGTGAATGAATACTCCAATTTGAAAGAGTCGAGCCTGTATTCGTGGGCTGAGCTGGGTACAGCTCCCTTTTTC CTTCGTCTTGGAGGTCTCTGGTTTGGAGCTCTCACTGTGCTTGGAGGTCCGATTGCTGCTGCAAGCTTTGATCCCACTAAGGACCCATTTAGGTTCACGC TCGCAGCTGGGACAGGAACCCTATTCCTTGTTTCCCTAATTGTCTTAAGAATTTATCTGGGATGGAGCTACGTTGGTGACAGACTTCTATCTGCAGTCAT ACCATACGAGGAGACTGGATGGTACGACGGTCAGATGTGGGCAAAGCCGCCAGAGGTCCTTGCTCGTGATAGACTCTTGGGCTCATACAAGGTAAAACCA GTAGTCAAGATGCTGAAACAAACATTGGTGGGGATAGGAGCATTACTGGTAGCTGCAACGTCACTGTTCGTATTTGCTACCCCAGTCGAAGATTTCTTCC AGACCACCTTTGCCACGGTGAGGGGAAGTCAATCTGATGGTCCAGCTTCACAAATCAGTGGCAAGTATAGTCTAAGAAAAGAGCAACTTCTGAAATTACC AGTAGAAGTTAAGACTGATGATGATTTAGCAGCAGCTGCGGCAAAAGCTGCTGATGGAAGACCAGCATACTGCAGAGACAGATATTATCGAGCATTAGCA GGTGGTCAATACTGCAAATGGCAAGATCTCCTGGACTGA
AA sequence Show only first row Show all	>Lus10011087 pacid=23165723 polypeptide=Lus10011087 locus=Lus10011087.g ID=Lus10011087.BGIv1.0 annot-version=v1.0 MLRLSIYCPPPRAIGCSNTCTRSRWLQLIKYHKSHNPIRRNFALKDGGGADGGTSSFQGRSWQPDSDVGVPFEQRPVNEYSNLKESSLYSWAELGTAPFF LRLGGLWFGALTVLGGPIAAASFDPTKDPFRFTLAAGTGTLFLVSLIVLRIYLGWSYVGDRLLSAVIPYEETGWYDGQMWAKPPEVLARDRLLGSYKVKP VVKMLKQTLVGIGALLVAATSLFVFATPVEDFFQTTFATVRGSQSDGPASQISGKYSLRKEQLLKLPVEVKTDDDLAAAAAKAADGRPAYCRDRYYRALA GGQYCKWQDLLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67370			Protein of unknown function (D...		Lus10011087 [exp]	0	1
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Lus10018931 [exp]	1.0	0.9679
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10042771 [exp]	2.0	0.9590
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10029740 [exp]	4.9	0.9452
AT5G43860		ATCLH2	ARABIDOPSIS THALIANA CHLOROPHY...		Lus10039372 [exp]	5.0	0.9330
AT2G21970		SEP2	stress enhanced protein 2 (.1)		Lus10035846 [exp]	5.5	0.9233
AT1G79510			Uncharacterized conserved prot...		Lus10009597 [exp]	6.0	0.9366
AT2G27290			Protein of unknown function (D...		Lus10005208 [exp]	6.3	0.9242
AT5G49740		ATFRO7, FRO7	ferric reduction oxidase 7 (.1...		Lus10012161 [exp]	7.3	0.9144
AT2G27290			Protein of unknown function (D...		Lus10013320 [exp]	8.5	0.9237
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10034292 [exp]	9.2	0.9186

Compare expression of checked genes

Lus10011087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.