Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G67360 1041 / 0 ARA12 Subtilase family protein (.1) AT2G05920 746 / 0 Subtilase family protein (.1) AT3G14240 702 / 0 Subtilase family protein (.1) AT5G51750 701 / 0 ATSBT1.3 subtilase 1.3 (.1) AT3G14067 687 / 0 Subtilase family protein (.1) AT4G34980 655 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT1G04110 561 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT1G01900 560 / 0 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G04160 543 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 531 / 3e-179 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019285 [exp] 1097 / 0 AT5G67360 1105 / 0.0 Subtilase family protein (.1) Lus10011537 [exp] 1080 / 0 AT5G67360 1117 / 0.0 Subtilase family protein (.1) Lus10014853 [exp] 1013 / 0 AT5G67360 806 / 0.0 Subtilase family protein (.1) Lus10007765 [exp] 919 / 0 AT5G67360 990 / 0.0 Subtilase family protein (.1) Lus10033431 [exp] 736 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Lus10034900 [exp] 730 / 0 AT2G05920 1107 / 0.0 Subtilase family protein (.1) Lus10013187 [exp] 661 / 0 AT3G14240 1175 / 0.0 Subtilase family protein (.1) Lus10037449 [exp] 656 / 0 AT3G14240 1177 / 0.0 Subtilase family protein (.1) Lus10013154 [exp] 637 / 0 AT3G14067 915 / 0.0 Subtilase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G145300 [exp] 996 / 0 AT5G67360 932 / 0.0 Subtilase family protein (.1) Potri.014G018900 [exp] 972 / 0 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.002G120400 [exp] 954 / 0 AT5G67360 966 / 0.0 Subtilase family protein (.1) Potri.006G141200 [exp] 736 / 0 AT2G05920 1103 / 0.0 Subtilase family protein (.1) Potri.001G167300 [exp] 723 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.012G131500 [exp] 720 / 0 AT5G51750 1102 / 0.0 subtilase 1.3 (.1) Potri.003G067000 [exp] 713 / 0 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.015G133800 [exp] 708 / 0 AT5G51750 1113 / 0.0 subtilase 1.3 (.1) Potri.001G163600 [exp] 683 / 0 AT3G14240 1174 / 0.0 Subtilase family protein (.1) Potri.003G071800 [exp] 681 / 0 AT3G14240 1199 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0570 [flax] [poplar] PPP-I PF05922 [flax] [poplar] Inhibitor_I9 Peptidase inhibitor I9 CL0570 [flax] [poplar] PF00082 [flax] [poplar] Peptidase_S8 Subtilase family CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10011089 pacid=23165717 polypeptide=Lus10011089 locus=Lus10011089.g ID=Lus10011089.BGIv1.0 annot-version=v1.0 ATGCCGGAGACTTTCTCCCTCCACACCAACTGGTACCAATCCTCCCTCCAATCCGTCTCCACCTCTGCCCACATCCTCTACACTTACAACCACGCCATCC ACGGCTACTCCACTCGCTTGACTTCCTCTCAAGCCAAGTTGCTCCAGTCTCACCCTGGTATCCTCTCCGTCATCCCGGAGACCGTCTATCAACTCCACAC CACTCACACCCCTCAGTTCCTCGGCCTCGACCTTGCTTCCCAGTTGTTCCCCCAGGCTGACACCCTCGGCGAAGTCGTTGTTGGAGTCCTCGACACCGGC GTCTGGCCCGAGAGCAAGAGCTTCGATGACACCGGTTTCGGGCCACTTCCCGGTACATGGAACGGTGAGTGTGAGATCGGTACCAATTTCACTAGATCTA ATTGCAATCGCAAGTTAATTGGTGCCAGATTCTTCGCCAAGGGTTATGAAGCAACTTTGGGCCCTGTCGACGAATCCAAAGAGTCCAGATCTCCTAGGGA CGACGACGGTCACGGCACTCACACCTCTACCACCGCCGCCGGTTCCGCCGTCGACGGAGCCAGCCTTCTCGGCTATGCATCTGGTACTGCTCGCGGAATG GCCAACCGAGCTCGGGTTGCCGTTTATAAAGTGTGTTGGGTTGGAGGCTGTTTCAGCTCCGATATTCTTGCAGCCATGGATAAGGCGATTGAGGACGGTG TCAATGTCATGTCCATGTCACTCGGTGGAGGGAACTCCGACTATTACAGAGACAGTGTTGCCATTGGAGCTTGCTCGGCTATGGAGAAGGGGATCTTGGT CTCTTGCTCTGCTGGTAATGCTGGCCCAACTGCTTACAGCTTGTCTAATGTTGCTCCTTGGATAACGACTGTTGGAGCGGGGACAGTTGATCGGGATTTC CCTGCTTTTGTTAGCTTGGGAAACGGCCAGAACTATTCAGGTGTCTCTCTGTTCAAGGGAGCCTCCTTGCCTGCCTATCTTCTGCCGTTCGTTTACGCCG GTAATGCTAGCAACGCTACCAATGGGAATCTTTGTATGATGGGAACTCTAATTCCGGAGAAAGTGAAGGGAAAAATTGTGCTCTGTGACAGGGGAGTGAA TGCCAGAGTCCAGAAAGGAGCAGCAGTAAAAGCCGCCGGCGGATTGGGAATGGTTTTGGCCAACACCGAAGCCAACGGCGAGGAGTTGGTTGCCGATGCT CACTTACTCCCGGCAACGGCGGTAGGTCAGAAGACGGGGGATGCAATCAAGAAATACTTGACTTCAGATCCGACCCCTAAGGCAACAATACTCTTCGAGG GGACAAAGCTCGGGATCGAGCCTTCACCGGTGGTGGCGGCATTCAGCTCAAGAGGTCCAAACTCTATCACGCCGGAGATTCTCAAACCGGACATCATCGC GCCAGGAGTCAACATCTTAGCGGGTTGGACGGGTAAGATCGGTCCCACAGGGTTAGCAACGGATTCCCGACGAGTGGAGTTCAACGTCATCTCCGGCACT TCCATGTCTTGTCCACACGTCAGCGGCCTAGCCGCCCTCCTGAAGGCGGCGCATCCAGAGTGGAGTCCCGCCGCCATCAGATCAGCGCTGATGACCACCG CTTACTCAACCTATAAAAGCGGCCAGAAGCTTCAAGACGTGGCCACAGGGAACGACTCGACGCCGTTCGATCACGGAGCTGGACACGTACATCCCGTCGC AGCTCTTAATCCGGGACTGGTGTACGATCTGATGGCGGAGGATTACTTAGGGTTCCTGTGCGCGCTGAACTACACGGATATGCAGATCAAAAGCGTGGCG AGGAAGAACTATACTTGCGACCACAAGAAGAAGTACAGTGTGGCCAGTCTCAACTACCCTTCTTTCGCCGTAAACGTGGATACAACTGAGATGAGCGCCG GAGGAAAGGTTGTGATAAAACACAACCGGACACTGACGAACGTAGAAGTGGGGCCCGCAGTGGAGTACAGGGTGTCGGTTTCACCCAAGGAAATCCCAGG GGTTAAGATTAAGGTTGAGCCGGAAACGCTAAGTTTCAAGAATGCCAACGAGAAGAAGAGTTACACGGTGACGTTTACAGCGGATTCCATGCCGATGAGT ACCAACAGTTTCGCACGGTTGGAGTGGTCTAATGGGAAACGCAGTGTCGGGAGTCCGATAGCGGTTAGCTGGACTTAG
AA sequence Show only first row Show all	>Lus10011089 pacid=23165717 polypeptide=Lus10011089 locus=Lus10011089.g ID=Lus10011089.BGIv1.0 annot-version=v1.0 MPETFSLHTNWYQSSLQSVSTSAHILYTYNHAIHGYSTRLTSSQAKLLQSHPGILSVIPETVYQLHTTHTPQFLGLDLASQLFPQADTLGEVVVGVLDTG VWPESKSFDDTGFGPLPGTWNGECEIGTNFTRSNCNRKLIGARFFAKGYEATLGPVDESKESRSPRDDDGHGTHTSTTAAGSAVDGASLLGYASGTARGM ANRARVAVYKVCWVGGCFSSDILAAMDKAIEDGVNVMSMSLGGGNSDYYRDSVAIGACSAMEKGILVSCSAGNAGPTAYSLSNVAPWITTVGAGTVDRDF PAFVSLGNGQNYSGVSLFKGASLPAYLLPFVYAGNASNATNGNLCMMGTLIPEKVKGKIVLCDRGVNARVQKGAAVKAAGGLGMVLANTEANGEELVADA HLLPATAVGQKTGDAIKKYLTSDPTPKATILFEGTKLGIEPSPVVAAFSSRGPNSITPEILKPDIIAPGVNILAGWTGKIGPTGLATDSRRVEFNVISGT SMSCPHVSGLAALLKAAHPEWSPAAIRSALMTTAYSTYKSGQKLQDVATGNDSTPFDHGAGHVHPVAALNPGLVYDLMAEDYLGFLCALNYTDMQIKSVA RKNYTCDHKKKYSVASLNYPSFAVNVDTTEMSAGGKVVIKHNRTLTNVEVGPAVEYRVSVSPKEIPGVKIKVEPETLSFKNANEKKSYTVTFTADSMPMS TNSFARLEWSNGKRSVGSPIAVSWT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10011089 [exp]	0	1
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10000808 [exp]	2.4	0.9030
AT3G14300		ATPMEPCRC, ATPM...	A. THALIANA PECTIN METHYLESTER...		Lus10003934 [exp]	2.8	0.8889
AT2G26730			Leucine-rich repeat protein ki...		Lus10017756 [exp]	6.5	0.8877
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10005252 [exp]	8.8	0.8781
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	9.4	0.9024
AT4G14930			Survival protein SurE-like pho...		Lus10004909 [exp]	10.6	0.8639
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10025912 [exp]	11.0	0.8777
AT3G24480			Leucine-rich repeat (LRR) fami...		Lus10017727 [exp]	11.1	0.8942
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10009248 [exp]	11.5	0.8868
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10001797 [exp]	12.6	0.8820

Compare expression of checked genes

Lus10011089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.