Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18190 920 / 0 Protein kinase family protein (.1) AT3G03940 919 / 0 Protein kinase family protein (.1) AT2G25760 862 / 0 Protein kinase family protein (.1.2) AT3G13670 848 / 0 Protein kinase family protein (.1) AT3G03930 322 / 2e-104 protein kinase-related (.1) AT4G28540 190 / 9e-53 CKL6, PAPK1 casein kinase I-like 6 (.1) AT4G26100 186 / 2e-51 CKL1, CK1 casein kinase 1 (.1) AT1G03930 184 / 1e-50 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT5G57015 180 / 2e-49 CKL12 casein kinase I-like 12 (.1) AT2G19470 180 / 2e-49 CKL5 casein kinase I-like 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024261 [exp] 1145 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10023628 [exp] 1142 / 0 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10042455 [exp] 874 / 0 AT3G13670 1124 / 0.0 Protein kinase family protein (.1) Lus10026214 [exp] 863 / 0 AT3G13670 1085 / 0.0 Protein kinase family protein (.1) Lus10039203 [exp] 861 / 0 AT3G13670 1132 / 0.0 Protein kinase family protein (.1) Lus10025827 [exp] 848 / 0 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2) Lus10005479 [exp] 846 / 0 AT2G25760 1093 / 0.0 Protein kinase family protein (.1.2) Lus10037565 [exp] 816 / 0 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2) Lus10014152 [exp] 814 / 0 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G034500 [exp] 924 / 0 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.001G009700 [exp] 879 / 0 AT3G13670 1100 / 0.0 Protein kinase family protein (.1) Potri.003G215700 [exp] 874 / 0 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.018G046400 [exp] 869 / 0 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.006G236600 [exp] 857 / 0 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2) Potri.001G189100 [exp] 850 / 0 AT2G25760 1051 / 0.0 Protein kinase family protein (.1.2) Potri.003G049700 [exp] 824 / 0 AT2G25760 1041 / 0.0 Protein kinase family protein (.1.2) Potri.018G065900 [exp] 187 / 1e-51 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.003G043500 [exp] 184 / 8e-51 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 184 / 1e-50 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10011091 pacid=23167545 polypeptide=Lus10011091 locus=Lus10011091.g ID=Lus10011091.BGIv1.0 annot-version=v1.0 ATGCCAAATTTGCACGCTGGAGTTCGGCGATCACAGAGGGTGAAGAATAACCAGAGCCCTGCTGGTGTTGTTGCTGCTGCTACCCGTGGTGGGAGGAGAG GACCTGGTCGTGGAAGGGGCAGCAGAGTGATGAATCAAGACCGAAATGGAAAGCTTTTAGGAACTGGTATGCGCGATCAAGGTCACCCAGGTTTGGAATT GCCGCTTAGGCAACCGGTTGAGAAAAGTGCTGAAAAATTGGTAGCAGGTGATGAGGAAGGGAGCGCTAGTCCTCTACCTGAAAGGGTGAAACTTGGCAAC TCACCAATGTACAAAATAGACAGAAAGCTTGGCAAAGGAGGCTTTGGGCAAGTTCATGTTGGGAGAAGGGTGTCTGGAGGCTCTGGACGCTCTGGGCCTG ATGCCTATGAGCTTGCTTTAAAATTTGAGCACAAAAATAGTAAAGGATGCAATTATGGTCCTCCTTATGAGTGGCAAGTGTATAGCAACCTTAATGGCTG TTATGGACTTCCATTGGTCCACTACAAAGGTCAACAAGGAGACTACTATATCCTCGTAATGGACATGCTGGGGCCAAGTTTATGGGATGTTTGGAACTCT AACAATCAGATGCTTTCTGAACAAATGGCTGCTTGTATAGCAGTGGAGGCAATCTCCATTTTAGAACAGCTGCACGCAAGAGGCTTTGTGCATGGAGATG TTAAGCCAGAAAACTTCTTGCTTGGTCAGCCTGGAACTCCGCATGAGAAGAAACTCTATTTAGTTGATCTTGGTTTGGCTTCAAGGTGGAAGGATTCGAC ATCTGGCCGTCATGTAGAGTATGATCAAAAGCCTGACGTTTTCAGGGGCACTGTGCGGTATGCTAGTGTACATGCCCATTTGGGCAGGACAGGGAGCCGC AGGGATGATCTTGAGTCCCTAGCTTATACCCTGATATTCCTTCTTAGGGGAAAGCTCCCATGGCAGGGTTATGCCGGTGAAAATAAAGGATTCCTTGTCT GTAAGAAGAAAATGGCTACTTCTCCGGAGATGATGTGTTGTTTGTGCCCTCCTCCGTTTCAGCATTTTCTTGAGATGGTTACGAATATGAAATTTGATGA AGAACCAAATTACTCAAAACTGATATCCATTTTTGATAGCATTATAGGCTCCAATGTCTTATTACGACCCATCTTAACTGATGGGGCCATAAAGGCGGGC CAAAAGAGGGGAAGGTCTCTTGCTGAGTTGGGGGATGAGGGTCAACCAAAAAAGAAAATTCGGCTTGGTACTCCGGCTACTCAGTGGATTTCAGTATACA GTTCTAGAAACTCAATGAAGCAAAGGTATCACTATAATGTGGTGGATTCGAGGCTTGGGCAACATGTCGAGAAGGGAAAAGAAGATGGACTATTTATTAG CTGCATTGCTTCCTCTGCCAACTTGTGGGCTGTTGTCATGGATGCGGGAACTGGGTTCAGTACTCAGGTTTATGAATTATCTTCCAGTTTCTTGCCCAAG GAGTGGATAATGGAACAATGGGACAAGAATTTTTACATAACTTCAATCGCTGGTACAACTAATGGCAGTTCCTTGGTGGTTATGTCAAAAGGGACCGCCT ATACTCAACAATCCTACAAAGTTAGCGATATATTCCCTTTCAAATGGATCAATAAGAAATGGAAAGAAGGATTCTCTGTTACCTCAATGACCACTGCAGG TAGTAAGTGGGGGATTGTCATGTCCAGGAATGCAGGTTATCTAAACCAGGTGGTTGAACTCGATTTCCTGTATCCTAGTGACGGGATCCATAGGAGATGG GAAAATGGATATCGAATTACTGCATCTGCTGCGACAGCTGACCAGGCTGCATTCATACTTAGTACACCCAAGAAGAAATTACCAGAAGCTGCTCAAGAAA CCTTGAGGACATCTGCCTTTCCTAGTACCCATGTTAAGAGTATTGTCAAAACGGCGGATTCAGGCAAGGAATTTATGGAGACAATTTATCTAGGAAGGAG TCTGACGGCGGCTGCGTGCAGGTCCTGCCGCCGTGGCGGAGGCTCTGTTTCCTCAATGTGGAAGGTGAGGTGGATGAAGCTGCGAACTACGAGGAGGAGG AAGACAGTTTCTGCAGGAAAAGGTTGCCCTTGTAACTGTACTAGTAGTTATGATGAATTAAGTTACAAACAGAACTTTGAAGCCATGGATGATGATGATG AGCCTGACTGCTTTCTCCGATCTTTCTCAGTCCGATATGCTGATCCTTCCTCCAGAAACAAGCCCCCTCTTCTCTTAATTTGA
AA sequence Show only first row Show all	>Lus10011091 pacid=23167545 polypeptide=Lus10011091 locus=Lus10011091.g ID=Lus10011091.BGIv1.0 annot-version=v1.0 MPNLHAGVRRSQRVKNNQSPAGVVAAATRGGRRGPGRGRGSRVMNQDRNGKLLGTGMRDQGHPGLELPLRQPVEKSAEKLVAGDEEGSASPLPERVKLGN SPMYKIDRKLGKGGFGQVHVGRRVSGGSGRSGPDAYELALKFEHKNSKGCNYGPPYEWQVYSNLNGCYGLPLVHYKGQQGDYYILVMDMLGPSLWDVWNS NNQMLSEQMAACIAVEAISILEQLHARGFVHGDVKPENFLLGQPGTPHEKKLYLVDLGLASRWKDSTSGRHVEYDQKPDVFRGTVRYASVHAHLGRTGSR RDDLESLAYTLIFLLRGKLPWQGYAGENKGFLVCKKKMATSPEMMCCLCPPPFQHFLEMVTNMKFDEEPNYSKLISIFDSIIGSNVLLRPILTDGAIKAG QKRGRSLAELGDEGQPKKKIRLGTPATQWISVYSSRNSMKQRYHYNVVDSRLGQHVEKGKEDGLFISCIASSANLWAVVMDAGTGFSTQVYELSSSFLPK EWIMEQWDKNFYITSIAGTTNGSSLVVMSKGTAYTQQSYKVSDIFPFKWINKKWKEGFSVTSMTTAGSKWGIVMSRNAGYLNQVVELDFLYPSDGIHRRW ENGYRITASAATADQAAFILSTPKKKLPEAAQETLRTSAFPSTHVKSIVKTADSGKEFMETIYLGRSLTAAACRSCRRGGGSVSSMWKVRWMKLRTTRRR KTVSAGKGCPCNCTSSYDELSYKQNFEAMDDDDEPDCFLRSFSVRYADPSSRNKPPLLLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18190			Protein kinase family protein ...		Lus10011091 [exp]	0	1
AT5G11700			unknown protein		Lus10043045 [exp]	1.7	0.8823
AT3G26670			Protein of unknown function (D...		Lus10041504 [exp]	2.0	0.8833
AT1G51590		MNS1, MANIB	ALPHA-MANNOSIDASE IB, alpha-ma...		Lus10033368 [exp]	2.8	0.8754
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10036682 [exp]	3.7	0.8466
AT3G06440			Galactosyltransferase family p...		Lus10032650 [exp]	4.2	0.8732
AT1G21660			Chaperone DnaJ-domain superfam...		Lus10018854 [exp]	4.7	0.8519
AT5G19390			Rho GTPase activation protein ...		Lus10036047 [exp]	4.9	0.8674
AT2G27900			unknown protein		Lus10009613 [exp]	5.5	0.8858
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10033335 [exp]	6.0	0.8644
AT1G55620		CLCF, ATCLC-F, ...	chloride channel F (.1.2)		Lus10032888 [exp]	7.4	0.8746

Compare expression of checked genes

Lus10011091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.