Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19650 105 / 5e-27 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT2G18500 94 / 6e-22 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT3G52525 85 / 7e-20 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT2G36026 80 / 6e-18 OFP Ovate family protein (.1) AT2G30400 81 / 3e-17 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1) AT5G58360 79 / 8e-17 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT1G06920 79 / 1e-16 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) AT5G01840 77 / 3e-16 OFP AtOFP1 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) AT2G36030 72 / 5e-16 unknown protein AT4G18830 71 / 9e-14 OFP ATOFP5, OFP5 ovate family protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043243 [exp] 412 / 2e-145 AT5G19650 105 / 4e-27 ovate family protein 8 (.1) Lus10041730 [exp] 91 / 7e-21 AT2G18500 134 / 3e-37 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Lus10025241 [exp] 91 / 2e-20 AT1G06920 112 / 2e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10006092 [exp] 90 / 3e-20 AT5G01840 121 / 5e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10008589 [exp] 87 / 2e-19 AT5G01840 120 / 6e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10042224 [exp] 87 / 4e-19 AT5G01840 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10021302 [exp] 83 / 1e-18 AT3G52525 120 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10014164 [exp] 82 / 2e-18 AT1G06920 104 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10015236 [exp] 81 / 1e-16 AT4G18830 112 / 1e-27 ovate family protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G080100 [exp] 202 / 1e-63 AT5G19650 107 / 8e-28 ovate family protein 8 (.1) Potri.006G156176 [exp] 182 / 1e-55 AT5G19650 104 / 8e-27 ovate family protein 8 (.1) Potri.006G158800 [exp] 139 / 2e-39 AT5G19650 0 / 1 ovate family protein 8 (.1) Potri.007G028000 [exp] 106 / 3e-26 AT2G18500 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.005G125200 [exp] 103 / 3e-25 AT2G18500 111 / 7e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.002G262500 [exp] 97 / 9e-23 AT5G19650 94 / 2e-22 ovate family protein 8 (.1) Potri.009G161700 [exp] 89 / 3e-21 AT3G52525 61 / 6e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Potri.016G072800 [exp] 87 / 4e-20 AT2G36026 118 / 1e-33 Ovate family protein (.1) Potri.006G205400 [exp] 84 / 4e-19 AT2G36026 115 / 3e-32 Ovate family protein (.1) Potri.004G200500 [exp] 82 / 1e-18 AT3G52525 69 / 4e-15 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10011092 pacid=23167524 polypeptide=Lus10011092 locus=Lus10011092.g ID=Lus10011092.BGIv1.0 annot-version=v1.0 ATGGAAAACCGATTCAAGACCCGAATCTCTCGTATGTTCGGCAAACCATTCGGATCCTCTTGCCGTACCCGGAACTTATCCTCCGACGTCGTAGAGAAAG CCGTCTTCCTTCCTCACCGACAACAACACATTTCCAACGACGGAAGTGGAAGCTGCAGATTAATCTCCCCTGTTTCTCCTCCCAAAAAGAATCGGCCTTT CCCGACCACGATATGCAGCAGAGCCACGTGTCCCGAAGCTGCTTCCACTCGTGTCATCAATCATTGTACCGTTTCCGCCTCCTCCGTCCGCCGCCGGAGC AGACAAGGAGTCAAATCTGGTCGTCTTGTTCCTGCAGCCTCCCCTGTTTCTCCGTTGACTCAGTCCTACTACGAGAAAATACAGAGCACCAGAAAACAGG GGAAAAACAACAACAACAAGAAGAAGAAACAGAGCATTTCCCAGAGGCGAGAAAGCAGTTCCCTTTTCAGCTCGTCGTCCCTCGACAGCGCGTATTTCGG AGGGAGTTACTACTGGTTTAGTACCAGCGACGAGAAGGAGGAAGACGGAGAGTTAAATGGGTACGAGAACGACGACGAGTCCGACACTCAGTTTTTCTCA TCCAGAAGCTTCTCTTCCTCCGATTCATCCACTGTTTCAGCTCTGAAAAATCAGAGTTCTGGCAATACGGCGGGAAAGAAGGGCAAGAGTGAGGATGAGG AAATCGGAGTGTTGCAGAAAGTGAAGGGGAGCTTCGCGGTGGTGAAGAGCTCGAGCGATCCGTACAACGATTTCAGGAAATCGATGGTGGAGATGATAGT AGAGAAGCAGATATTCGGGGCCAAGGATTTGGAGCAGCTGCTGCAGTGTTTCTTGTCGCTTAACGCGGATCGTCACCATAGGATAATTGTGGAGGTGTTC ACTGAGATTTGGGAGACATTGTTCTCCAATTGGTCTTTTGATTAG
AA sequence Show only first row Show all	>Lus10011092 pacid=23167524 polypeptide=Lus10011092 locus=Lus10011092.g ID=Lus10011092.BGIv1.0 annot-version=v1.0 MENRFKTRISRMFGKPFGSSCRTRNLSSDVVEKAVFLPHRQQHISNDGSGSCRLISPVSPPKKNRPFPTTICSRATCPEAASTRVINHCTVSASSVRRRS RQGVKSGRLVPAASPVSPLTQSYYEKIQSTRKQGKNNNNKKKKQSISQRRESSSLFSSSSLDSAYFGGSYYWFSTSDEKEEDGELNGYENDDESDTQFFS SRSFSSSDSSTVSALKNQSSGNTAGKKGKSEDEEIGVLQKVKGSFAVVKSSSDPYNDFRKSMVEMIVEKQIFGAKDLEQLLQCFLSLNADRHHRIIVEVF TEIWETLFSNWSFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19650	OFP	ATOFP8, OFP8	ovate family protein 8 (.1)		Lus10011092 [exp]	0	1
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10031608 [exp]	6.4	0.9198
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10043361 [exp]	6.5	0.8747
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10042007 [exp]	6.8	0.9175
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10009336 [exp]	6.9	0.8974
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	7.1	0.8982
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10005313 [exp]	12.0	0.8784
AT3G49950	GRAS		GRAS family transcription fact...		Lus10039709 [exp]	12.2	0.8936
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	13.8	0.8943
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10036496 [exp]	20.6	0.8884
AT2G32350			Ubiquitin-like superfamily pro...		Lus10039679 [exp]	23.5	0.8590

Compare expression of checked genes

Lus10011092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.