Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13260 567 / 0 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT5G25620 528 / 0 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT5G11320 497 / 6e-176 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT1G04610 474 / 2e-166 YUC3 YUCCA 3 (.1) AT4G28720 469 / 1e-164 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT1G04180 468 / 3e-164 YUC9 YUCCA 9 (.1) AT5G43890 461 / 2e-161 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT4G32540 459 / 1e-160 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT2G33230 453 / 4e-158 YUC7 YUCCA 7 (.1) AT1G48910 345 / 3e-116 YUC10 YUCCA 10, Flavin-containing monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023637 [exp] 654 / 0 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10007671 [exp] 504 / 1e-177 AT4G13260 518 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10013125 [exp] 499 / 1e-176 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10008092 [exp] 493 / 3e-174 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10024023 [exp] 477 / 6e-168 AT5G25620 479 / 7e-169 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Lus10035244 [exp] 474 / 9e-167 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10023695 [exp] 472 / 2e-165 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10022851 [exp] 466 / 2e-163 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10041729 [exp] 466 / 7e-163 AT5G25620 473 / 6e-166 YUCCA6, Flavin-binding monooxygenase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G243400 [exp] 577 / 0 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 574 / 0 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.007G028200 [exp] 504 / 1e-178 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.002G254200 [exp] 485 / 8e-171 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.006G248200 [exp] 479 / 1e-168 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.008G174600 [exp] 472 / 1e-165 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.018G033200 [exp] 459 / 5e-161 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.010G062400 [exp] 456 / 7e-158 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.002G207400 [exp] 357 / 3e-121 AT1G48910 429 / 3e-150 YUCCA 10, Flavin-containing monooxygenase family protein (.1) Potri.005G111800 [exp] 339 / 6e-114 AT1G21430 425 / 4e-148 Flavin-binding monooxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00743 [flax] [poplar] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Lus10011093 pacid=23167510 polypeptide=Lus10011093 locus=Lus10011093.g ID=Lus10011093.BGIv1.0 annot-version=v1.0 ATGGACTACTTTAATCATGAAGTGGACGGGAAGCGGGTTCACGACCATTATTTGGATACCAAGAAAACGCCATCATCCCCAGAACGAACCGTGTGGGTCC CCGGTGCCTTAATCGTCGGCGCCGGACCGTCTGGCCTGGCGGCAGCTGCCTGCCTCAAGGAAAAGGGTGTCCCGAGCCTGATCGTGGAGCGGGCAGATTG CATAGCTTCACTCTGGCAGCACAAGACCTACGACCGCCTCCGCCTACACCTTCCGAAACACTGCTGCCAGCTCCCTCTCATGCCTTTCCCTTCGAGCTTC CCGACTTACCCAACCAAACAGCAATTTCTGGCCTACCTCGAGTCGTACCGGACACGATTCCAAATCGAGCCGGTCTTCAACTGTAGCGTGGTCAGCGCGG AGTTTGACACACGCTGCGAGTTGTGGAGGGTGAAGACCCTACTGCGGAGTCGGCAGGAGGTGGAGTACGTTTGCCAGTGGCTGGTAGTTGCAACAGGGGA GAATGCAGAGGCTTTCGTGCCGGAGTTGGAAGGTATCGGGGAGTTTCGTGGGCCGGTGGTTCATACTAGCTGCTACAGGAGCGGCGAGGCGTTCCAGGAG AAGAAGGTATTGGTAGTTGGTTGCGGAAACTCCGGGATGGAGATTTGCCTTGACCTCTGCAATTACAAAGCTCGAACTTCTCTGGTTGTTAGAGACTCGC TGCACGTACTGCCGCAACAGATGCTTGGGGCATCAACTTTTGGACTTTCCATGTGGTTGATCAAGTGGTTCTCCGTCCCATTGGTGGATCGGTTCTTGCT AATCATGTCCCGTTTGATGCTCGGCGATGCCACCCGGCTTGGCCTATCTCGCCCTAAACTCGGACCCTTGGAGCTCAAAAACCTCACCGGGAAAACTCCC GTCTTGGATGTCGGAACCCTCGCTAAAATAAGAAGCGGCGATATTAAGGTGCGTCGAGCGATCAAGAGAATAACCCATCAAGGATCGGTAGAGTTTGTGG ACGGAAGGGTGGAGAAATTCGAAGCCATCATCCTAGCAACAGGATACAAAAGCAACGTACCAACATGGCTTAAGGATAGTAAGATGTTTTCGGAGAAAGA TGGGTTGCCGAGAAAAGCATTTCCGAATGGATGGAAAGGCGAGAAGGGGTTGTTTGCGGTGGGGTTCACCAACCGTGGGCTTCTAGGGGCTTCGATGGAT GCACTGAGGATCGCGGAGGACATTGAGCTCCGTTGGAAATTTAAGCTGACCAAACTGAAGTGA
AA sequence Show only first row Show all	>Lus10011093 pacid=23167510 polypeptide=Lus10011093 locus=Lus10011093.g ID=Lus10011093.BGIv1.0 annot-version=v1.0 MDYFNHEVDGKRVHDHYLDTKKTPSSPERTVWVPGALIVGAGPSGLAAAACLKEKGVPSLIVERADCIASLWQHKTYDRLRLHLPKHCCQLPLMPFPSSF PTYPTKQQFLAYLESYRTRFQIEPVFNCSVVSAEFDTRCELWRVKTLLRSRQEVEYVCQWLVVATGENAEAFVPELEGIGEFRGPVVHTSCYRSGEAFQE KKVLVVGCGNSGMEICLDLCNYKARTSLVVRDSLHVLPQQMLGASTFGLSMWLIKWFSVPLVDRFLLIMSRLMLGDATRLGLSRPKLGPLELKNLTGKTP VLDVGTLAKIRSGDIKVRRAIKRITHQGSVEFVDGRVEKFEAIILATGYKSNVPTWLKDSKMFSEKDGLPRKAFPNGWKGEKGLFAVGFTNRGLLGASMD ALRIAEDIELRWKFKLTKLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10011093 [exp]	0	1
AT4G12690			Plant protein of unknown funct...		Lus10036872 [exp]	2.2	0.9534
AT3G61260			Remorin family protein (.1)		Lus10030379 [exp]	3.5	0.9378
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10005557 [exp]	4.5	0.9339
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012742 [exp]	5.0	0.9274
AT4G12690			Plant protein of unknown funct...		Lus10006223 [exp]	5.7	0.9469
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10024415 [exp]	8.5	0.9190
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10018774 [exp]	10.5	0.9107
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Lus10017708 [exp]	11.8	0.9166
					Lus10013722 [exp]	17.1	0.8147
AT1G22690			Gibberellin-regulated family p...		Lus10009421 [exp]	35.6	0.9235

Compare expression of checked genes

Lus10011093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.