Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55980 40 / 2e-05 serine-rich protein-related (.1) AT3G13227 39 / 6e-05 serine-rich protein-related (.1) AT1G67910 38 / 8e-05 unknown protein AT5G20370 39 / 0.0002 serine-rich protein-related (.1) AT3G56500 36 / 0.0008 serine-rich protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023632 [exp] 50 / 3e-09 AT1G67910 48 / 1e-08 unknown protein Lus10043215 [exp] 48 / 2e-08 AT5G55980 44 / 8e-07 serine-rich protein-related (.1) Lus10034901 [exp] 45 / 2e-07 AT1G67910 49 / 6e-09 unknown protein Lus10008880 [exp] 38 / 0.0002 AT5G55980 63 / 1e-13 serine-rich protein-related (.1) Lus10023227 [exp] 38 / 0.0002 AT5G55980 69 / 3e-16 serine-rich protein-related (.1) Lus10000442 [exp] 37 / 0.0004 AT1G67910 56 / 1e-11 unknown protein Lus10026701 [exp] 37 / 0.0004 AT1G67910 56 / 5e-12 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G079200 [exp] 44 / 7e-07 AT1G67910 45 / 9e-08 unknown protein Potri.001G371400 [exp] 40 / 5e-05 AT5G55980 50 / 2e-08 serine-rich protein-related (.1) Potri.010G046700 [exp] 38 / 0.0001 AT1G67910 82 / 4e-22 unknown protein Potri.008G186200 [exp] 38 / 0.0002 AT1G67910 85 / 4e-23 unknown protein Potri.018G078900 [exp] 36 / 0.0006 AT3G13227 42 / 3e-06 serine-rich protein-related (.1) Potri.006G159300 [exp] 36 / 0.0008 AT1G24577 43 / 5e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011094 pacid=23167518 polypeptide=Lus10011094 locus=Lus10011094.g ID=Lus10011094.BGIv1.0 annot-version=v1.0 ATGGGTTCCAACGCCGGCAGCCTGACAGTTTCCACAGCCTCCCCTAAAGGCGGCGGCGGCGGCGATGGAAGCGGCACTGCCGCTGGAGGTGGTGGTCAGT GCCTGTGCTCGCCAACGACGCATAAGGGATCGTTCAGGTGCAGATTCCATGGAGCTTCTTCCTCTGCTTTGAGTAAGAAGATGATGAAGAGATCATATTC CATGCCTGCTAATAATAATATTTCTTCTTCTTCTTCTTCTATTGCTCCTGATTCCTCCGCCTCCTTGGCCTGTATTTCTCCCGAATCCGTTGAATCAACT TAG
AA sequence Show only first row Show all	>Lus10011094 pacid=23167518 polypeptide=Lus10011094 locus=Lus10011094.g ID=Lus10011094.BGIv1.0 annot-version=v1.0 MGSNAGSLTVSTASPKGGGGGDGSGTAAGGGGQCLCSPTTHKGSFRCRFHGASSSALSKKMMKRSYSMPANNNISSSSSSIAPDSSASLACISPESVEST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55980			serine-rich protein-related (....		Lus10011094 [exp]	0	1
AT2G39130			Transmembrane amino acid trans...		Lus10039190 [exp]	2.0	0.9434
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	11.3	0.9325
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	11.4	0.9450
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10041544 [exp]	14.8	0.9253
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10004375 [exp]	17.8	0.9423
AT5G53160		RCAR3, PYL8	PYR1-like 8, regulatory compon...		Lus10039335 [exp]	20.9	0.9365
AT2G23450			Protein kinase superfamily pro...		Lus10032741 [exp]	21.3	0.9386
AT1G13195			RING/U-box superfamily protein...		Lus10006253 [exp]	29.9	0.9344
AT3G26935			DHHC-type zinc finger family p...		Lus10016754 [exp]	31.1	0.9249
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034094 [exp]	32.6	0.9194

Compare expression of checked genes

Lus10011094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.