Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13270 219 / 2e-72 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G52330 163 / 2e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT3G54200 46 / 6e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G01080 43 / 5e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043216 [exp] 360 / 6e-128 AT4G13270 228 / 8e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10023631 [exp] 286 / 1e-98 AT4G13270 235 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10024264 [exp] 235 / 3e-78 AT4G13270 210 / 8e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10011458 [exp] 136 / 1e-39 AT1G52330 168 / 2e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10037534 [exp] 134 / 4e-39 AT1G52330 160 / 2e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10006764 [exp] 71 / 5e-15 AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018361 [exp] 69 / 2e-14 AT3G54200 91 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007649 [exp] 62 / 6e-12 AT3G54200 85 / 2e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020060 [exp] 63 / 8e-12 AT3G54200 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G159400 [exp] 210 / 6e-69 AT4G13270 228 / 3e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G180600 [exp] 172 / 8e-54 AT1G52330 192 / 9e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.003G055000 [exp] 166 / 2e-51 AT1G52330 181 / 1e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.016G142300 [exp] 59 / 2e-10 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 58 / 3e-10 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G230400 [exp] 57 / 6e-10 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 49 / 3e-07 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 47 / 1e-06 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G021934 [exp] 40 / 0.0006 AT2G01080 249 / 2e-83 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10011095 pacid=23167526 polypeptide=Lus10011095 locus=Lus10011095.g ID=Lus10011095.BGIv1.0 annot-version=v1.0 ATGCCATCCAAGTCCGCCGTCGATGAGCCCTACACCGCCCTCCCCGCCGGCTACTCTCAAAACGTCATCCTTCTCCCATACTACCGTCCTCCTCCACCCA ACCCTATCCTACTCTTCCTACGCCGTTGTCTCGCCTTCACCGTCCTCGCAATCCTCCTATCCTCAGCCGTCTTCTTCCTCTACCCTTCCGATCCGCAAAT CAAAGTCGTCCGCGTGGGACTCAACAAAATCCAAGTCCAGTACTCTCCTAGTCTCACTCTCGACGTATCCTTATCACTCGCCGTCAGGGTTCGGAACCCG GACTTCTACTCCCTCGACTACGATTACCTTTCGGTTTCGATCGGGTACAGAGGGAGGCAGATTGGCTTGGTAAGGTCGGAAGGTGGGAGCGTTAGCGCCA GAGGATCGTCTTACGTCAACGCCACGCTTGATTTTGACGGCCTCGAGTTCTTTCAGGACGCGTTTTACTTGATCGGGGATTTAGCTAAGGGCGTTATCCA GTTCGATACGACGACCACGGTTAACGGCGATTTAGGGCTCTTGTTCTTCGAGATTCCTATTGAGGGTAAAGTATCATGTGAAGTTTACGTGAGCACAAAC AACCAGACAGTCGTTCGTCAGAATTGCTACCCTCTGGTAAGGAAACCTGTTTTCTGTATAATACGCTGA
AA sequence Show only first row Show all	>Lus10011095 pacid=23167526 polypeptide=Lus10011095 locus=Lus10011095.g ID=Lus10011095.BGIv1.0 annot-version=v1.0 MPSKSAVDEPYTALPAGYSQNVILLPYYRPPPPNPILLFLRRCLAFTVLAILLSSAVFFLYPSDPQIKVVRVGLNKIQVQYSPSLTLDVSLSLAVRVRNP DFYSLDYDYLSVSIGYRGRQIGLVRSEGGSVSARGSSYVNATLDFDGLEFFQDAFYLIGDLAKGVIQFDTTTTVNGDLGLLFFEIPIEGKVSCEVYVSTN NQTVVRQNCYPLVRKPVFCIIR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13270			Late embryogenesis abundant (L...		Lus10011095 [exp]	0	1
AT1G07040			unknown protein		Lus10030795 [exp]	4.9	0.8609
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10029242 [exp]	11.4	0.8484
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10024861 [exp]	16.6	0.7441
AT4G31130			Protein of unknown function (D...		Lus10014344 [exp]	16.9	0.8557
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10040516 [exp]	17.7	0.8172
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10025358 [exp]	18.9	0.8433
AT4G26470			Calcium-binding EF-hand family...		Lus10027114 [exp]	19.6	0.8080
AT3G01170			Ribosomal protein L34e superfa...		Lus10030686 [exp]	21.6	0.8350
AT3G12800		SDRB, DECR	short-chain dehydrogenase-redu...		Lus10018323 [exp]	24.7	0.7880
AT1G07040			unknown protein		Lus10013272 [exp]	30.6	0.8391

Compare expression of checked genes

Lus10011095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.