Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24550 612 / 0 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT2G18470 547 / 0 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT4G34440 537 / 0 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT1G52290 517 / 8e-179 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24540 502 / 6e-173 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G49270 508 / 2e-172 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT3G18810 497 / 4e-168 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT1G70460 458 / 6e-153 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 454 / 2e-151 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT5G38560 450 / 4e-150 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043219 [exp] 759 / 0 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 674 / 0 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10024020 [exp] 514 / 1e-176 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014318 [exp] 499 / 9e-174 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10041734 [exp] 506 / 4e-173 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10042327 [exp] 496 / 1e-168 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10026335 [exp] 489 / 2e-168 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10040467 [exp] 472 / 4e-160 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10003066 [exp] 462 / 4e-154 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081300 [exp] 673 / 0 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.001G183000 [exp] 550 / 0 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 540 / 0 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.003G053301 [exp] 539 / 0 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.004G153600 [exp] 536 / 0 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 535 / 0 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.007G027000 [exp] 535 / 0 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.006G242800 [exp] 485 / 7e-163 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.008G111600 [exp] 463 / 2e-154 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 452 / 3e-150 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10011098 pacid=23167564 polypeptide=Lus10011098 locus=Lus10011098.g ID=Lus10011098.BGIv1.0 annot-version=v1.0 ATGTCAACTCCGGCGCCAACCTCCCCGCCTTCCACCAACACCACTTCCCCTCCTCCGGCTACTCCCTCCGCCCCTCCTCCGGCTACTCCTTCCGCCCCTC CTCCGGCCACACCTTCCGCCCCGCCTCCATCTCCTCCTGCATCCTCGCCGCCTTCCGTCACCCCTTCTCCTCCAGCTACATCCCCGCCTCCAACGCCGTC AACAACTCCTTCTCCTCCTTCTCCCGACATACCGCCGCCATCTACTCCTTCTCCTCCTTCAACCACCTCGCCGCCGTCTACTCCCACCCTTCCTACTCCG TCAGCGCCTGACACTCGTACCCCTCCATCTACGCGGTCGCCGCCTTCTTCCCCCACCGGTGGCGGCTCTCCGCCGAATTCTTCCTCTCCTCCTTCTTCCG GGGGGATATCGACCGGATTAGTGGTTGGGATTGCAATCGGGGGAGTCTTGCTCCTGTTGGTGCTCATCGGGCTGTGTATTTGCCGTAAGAGAAGGAGAAG AGGCGATCATGAAGCTGCTTACTACCCTCCTCCTCCTCCACCTCCTTCCGGCCCTAAAGTTGACCCTTACGGCGGCCAACATTGGCAGCAGAGTGCTCCA CCGCCGCCAGATCATGTTGTGGGAGCAATACCAAAGCCGCCGTCTCATTCGCCGCCGCCACCTCCACCGCACGGTTACATGAGCAGCAGTGGGGCGTCTA ACTACTCCGGTTCGGAAACGCCGCTGCCACCACCTTCCCCTGGGATGGCTTTGGGTTTCTCCAAGAGCACATTTACCTACGAGGAGCTAGCAAGGGCGAC TGATGGCTTCTCAGAAGCAAACTTACTGGGACAAGGTGGGTTTGGGTATGTTCATAGAGGAGTCCTTCCAAATGGTAAGGAGGTGGCTATCAAGCAGCTT AAAGCAGGGAGTGGGCAAGGGGAGAGGGAGTTCCAAGCCGAGGTGGAGATCATCAGCCGCGTTCATCACAAGCATCTTGTTTCCTTGGTTGGATACTGCA TCACTGGCTCTGAGAGATTGCTTGTTTACGAGTTCGTCCCAAACAACACCTTGGAGTTCCATCTGCATGCGAAAGGGCGACCTACTATGGAATGGCCGGC TAGGTTGAGAATTGCATTGGGTTCTGCTAAAGGGCTTGCATATCTCCATGAAGATTGCCATCCTAAAATCATTCATCGTGACATCAAGTCAGCCAATATA CTTTTGGATTTCAAGTTTGAGGCCATGGTTGCTGATTTTGGTTTAGCAAAGTTTTCATCTGATACCAACACCCATGTCTCCACTAGGGTGATGGGAACTT TTGGATATATGGCTCCGGAGTATGCTTCTAGTGGAAAACTGACCGAGAAGTCCGATGTTTTCTCCTTTGGGGTAATGCTTCTAGAGCTAATCACAGGACG GCGCCCTGTTGACTCAACGCACACTTACATGGATGACAGTCTCGTGGACTGGGCGCGACCTTTACTTTCACGGGCTCAAGAGGATGGAAACTACGATGTT TTGGTCGATCCAAAGCTTCAAGACAACTACGACCACAACGAGATGACTCGCATGGTTGCTTGTGCTGCTGCCTGCATTCGCCATTCTGCAAGGCGTAGGC CTCGTATGAGTCAGGTAGTCAGAGCTCTGGAAGGAGATGTATCACTAGCAGACCTGAACGAAGGAATGAAACCAGGGGACAGCAGAGGGTATGGTTCGTA TGGAAGCTCGGACTATGACACGAGCCAGTACAACGAGGACATGAGGAAGTTCAGGAAGATGGCACTTGGGAGCCAAGAGCATGGTGGGGTAAGCAGCGAG CACAGTGCTGCACCGACAACAAGCGAGTATGGTCTGAATCCGTCTGGTTCGAGCAGTGAAGGGAAGATGACGACGAGGGAGATGGAAATGGAAATGGGGA AGATGAAGAGAAACAACCCAGGTGGTTTCAGTGGCAGCTCCTCTTGA
AA sequence Show only first row Show all	>Lus10011098 pacid=23167564 polypeptide=Lus10011098 locus=Lus10011098.g ID=Lus10011098.BGIv1.0 annot-version=v1.0 MSTPAPTSPPSTNTTSPPPATPSAPPPATPSAPPPATPSAPPPSPPASSPPSVTPSPPATSPPPTPSTTPSPPSPDIPPPSTPSPPSTTSPPSTPTLPTP SAPDTRTPPSTRSPPSSPTGGGSPPNSSSPPSSGGISTGLVVGIAIGGVLLLLVLIGLCICRKRRRRGDHEAAYYPPPPPPPSGPKVDPYGGQHWQQSAP PPPDHVVGAIPKPPSHSPPPPPPHGYMSSSGASNYSGSETPLPPPSPGMALGFSKSTFTYEELARATDGFSEANLLGQGGFGYVHRGVLPNGKEVAIKQL KAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCITGSERLLVYEFVPNNTLEFHLHAKGRPTMEWPARLRIALGSAKGLAYLHEDCHPKIIHRDIKSANI LLDFKFEAMVADFGLAKFSSDTNTHVSTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDSTHTYMDDSLVDWARPLLSRAQEDGNYDV LVDPKLQDNYDHNEMTRMVACAAACIRHSARRRPRMSQVVRALEGDVSLADLNEGMKPGDSRGYGSYGSSDYDTSQYNEDMRKFRKMALGSQEHGGVSSE HSAAPTTSEYGLNPSGSSSEGKMTTREMEMEMGKMKRNNPGGFSGSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10011098 [exp]	0	1
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10043219 [exp]	1.0	0.9598
AT2G35658			unknown protein		Lus10011000 [exp]	5.5	0.8844
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10000640 [exp]	5.7	0.9045
AT1G78310			VQ motif-containing protein (....		Lus10010347 [exp]	11.3	0.8576
AT2G39650			Protein of unknown function (D...		Lus10000956 [exp]	14.9	0.9175
AT4G26750		EXT-like	extensin-like, hydroxyproline-...		Lus10033994 [exp]	16.3	0.8747
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Lus10028129 [exp]	16.4	0.8662
AT1G78310			VQ motif-containing protein (....		Lus10036480 [exp]	17.5	0.8941
AT1G78310			VQ motif-containing protein (....		Lus10010348 [exp]	20.5	0.8892
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10008187 [exp]	21.1	0.9034

Compare expression of checked genes

Lus10011098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.