Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20120 392 / 7e-139 COV1 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) AT2G20130 379 / 5e-134 LCV1 like COV 1 (.1) AT2G18460 356 / 1e-124 LCV3 like COV 3 (.1) AT1G43130 317 / 2e-109 LCV2 like COV 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043220 [exp] 344 / 4e-121 AT2G20120 324 / 9e-114 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Lus10014314 [exp] 346 / 2e-119 AT2G18460 379 / 3e-132 like COV 3 (.1) Lus10026023 [exp] 343 / 3e-118 AT2G18460 378 / 5e-132 like COV 3 (.1) Lus10028563 [exp] 334 / 5e-116 AT1G43130 405 / 1e-144 like COV 2 (.1) Lus10018868 [exp] 324 / 2e-111 AT1G43130 387 / 1e-136 like COV 2 (.1) Lus10028564 [exp] 316 / 6e-109 AT1G43130 405 / 2e-144 like COV 2 (.1) Lus10018869 [exp] 316 / 7e-109 AT1G43130 408 / 1e-145 like COV 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G158100 [exp] 427 / 1e-152 AT2G20120 409 / 5e-146 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.018G082100 [exp] 425 / 7e-152 AT2G20120 412 / 2e-147 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.005G124100 [exp] 340 / 3e-118 AT2G18460 365 / 2e-128 like COV 3 (.1) Potri.002G065800 [exp] 315 / 2e-108 AT1G43130 407 / 2e-145 like COV 2 (.1) Potri.005G148000 [exp] 309 / 2e-106 AT1G43130 319 / 2e-110 like COV 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04367 [flax] [poplar] DUF502 Protein of unknown function (DUF502)
Representative CDS sequence Show only first row Show all	>Lus10011099 pacid=23167514 polypeptide=Lus10011099 locus=Lus10011099.g ID=Lus10011099.BGIv1.0 annot-version=v1.0 ATGGGCGAAGAGAAATCCGCGATCGTAATGGCCAGTATAGAGCCCAGCAGAGAGCCAGATCGAGAGCTTCTCATCCATGTCTCCGACGCCAGCGGGCGTG ACACTGTCAGCCCTAAACCTTCTTCCTCTTCATCGCATCATCATCCCGGTCGCGAGACATTTTCCAAAGTTCTTCGGAGCTGGGCTTCAAAAAAGTTCAT GACAGGATGTGTAATCCTCTTCCCAATTGCTATTACTTTCTACATAACATGGTGGTTTATTCACTTTGTGGATGGATTTTTCTCTCCAATCTATGCTCAA CTTGGAATCAATATCTTTGCCTCTGATAATGGCCGGGTATCACTTGAATGTCTCGGATTTGTTACTTCAATTACGTTCATTTTCGTTGTTGGAGTATTCA TGTCATCATGGTTAGGGGCATCAGTCCTGAGCCTTGGAGAATGGTTTATCAAAAGGATGCCTTTTGTCCGCCATATCTATAATGCTTCAAAGCAAATTGG TGCTGCCATATCACCAGATCAGAACACACAAGCTTTTAAGGAAGTAGCCATCATACGACATCCACGTATTGGCGAATATGCATTTGGTTTCATAACATCC TCAGTTACCCTCCAGAACTATGCTGGAGACGAAGAGCTCTGTTGCGTTTATGTTCCGACAAATCACCTATACATTGGTGATATATTCCTGGTCAGTGCAA ATGATGTGATCAGACCTAACCTCTCAGTCAGGGAAGGAATAGAGATTGTGGTCTCTGGAGGGATGTCGATGCCCCAGATATTGTCAACATTGGATTCGCG CGTCACAGTGGATAGAAACAGATTGAGCAACAGAAGTTGA
AA sequence Show only first row Show all	>Lus10011099 pacid=23167514 polypeptide=Lus10011099 locus=Lus10011099.g ID=Lus10011099.BGIv1.0 annot-version=v1.0 MGEEKSAIVMASIEPSREPDRELLIHVSDASGRDTVSPKPSSSSSHHHPGRETFSKVLRSWASKKFMTGCVILFPIAITFYITWWFIHFVDGFFSPIYAQ LGINIFASDNGRVSLECLGFVTSITFIFVVGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQIGAAISPDQNTQAFKEVAIIRHPRIGEYAFGFITS SVTLQNYAGDEELCCVYVPTNHLYIGDIFLVSANDVIRPNLSVREGIEIVVSGGMSMPQILSTLDSRVTVDRNRLSNRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Lus10011099 [exp]	0	1
AT5G09850			Transcription elongation facto...		Lus10002088 [exp]	1.4	0.9639
AT5G09850			Transcription elongation facto...		Lus10003853 [exp]	2.4	0.9480
AT3G01040		GAUT13	galacturonosyltransferase 13 (...		Lus10015379 [exp]	3.9	0.9388
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Lus10028342 [exp]	8.1	0.9248
AT4G33000		SCABP8, ATCBL10...	SOS3-LIKE CALCIUM BINDING PROT...		Lus10015630 [exp]	10.4	0.9324
AT3G54480		SKP5, SKIP5	SKP1/ASK-interacting protein 5...		Lus10024168 [exp]	13.2	0.9283
AT5G50530			CBS / octicosapeptide/Phox/Bem...		Lus10043123 [exp]	16.9	0.9036
AT5G07910			Leucine-rich repeat (LRR) fami...		Lus10000681 [exp]	17.2	0.9289
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	17.9	0.9228
AT4G27745			Yippee family putative zinc-bi...		Lus10007773 [exp]	19.6	0.9272

Compare expression of checked genes

Lus10011099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.