Plant FIBer expression Database

Lus10011100 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24630 78 / 1e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10043221
[exp]
1226 / 0 AT3G24630 82 / 8e-16 unknown protein
Lus10010806
[exp]
44 / 0.0006 AT5G42710 179 / 3e-47 unknown protein
Lus10016315
[exp]
43 / 0.001 AT5G42710 179 / 4e-46 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G082300
[exp]
219 / 4e-60 AT3G24630 99 / 4e-21 unknown protein
Potri.002G261700
[exp]
44 / 0.0005 AT5G42710 185 / 4e-48 unknown protein
PFAM info
Representative CDS sequence
>Lus10011100 pacid=23167505 polypeptide=Lus10011100 locus=Lus10011100.g ID=Lus10011100.BGIv1.0 annot-version=v1.0
ATGTACAGACCATTTGTTACCTGTGAAGATCCCAAAGGTGTAGTTGAATGCGGGACAATCAGAAAGTCCAGCCATAGACATAAAAAGAAGAAGATTTCCG
CTGGAGGAGGGGAACACCACCATCCAAATCCATCTTCATTTCAGCTCATGGAGGTCTCAAAGGGAGCTAAGAAGCTGATGAACAAGGTACTGATTGATGA
ACAACATGGGTCGTCTAAGGATGAGAGTATGGCTGAGGATTTGCTCAAGGGAGCTCTTCATTTGAAAGACTCATTGGTAATGCTTGGGAAGTTGCAAGAT
GCTTCTGACTATATGTCTAAGTTGAAGCAGCAGAAACAGTTGAGGGAGAGGGAAAGAAGGGTTATTGATGATGATGATGGGTTTCCTTCAGTGATGAGGA
GGGCTACGTCATGTAGAGAACAAGATCCAAACTTTCAGATGATGGGGTTTCAAAGGCCAAGGCTTTCAGTTGATGGAGGAGGGGATTACATTGATGAGCT
GAGGATGGCAATTGCTGACAGCTTTGATAGGCAGAACTTGCTTTCAGTTGAGGAAAGGGCTTCTTTGCTTTACAGGAGAAGAAGAGATCAGGAGGAGTCA
ATGACTAAATCCAGTGATCAAACATTATCAAAGGTGGTAGAGAAGAAGAAGGACAAGAGTTCTTCTACGTCTTCAAATGTGATTGCCAGATTGATGGGAT
TGGAAGATATCCTGCCTCCTGAATCACCACCGAAGCGGATGGACATTGGCGTACCAAACTCGAATGTGAGGAAGCTGAAGCAGAAGAAAGAAGATTACCT
TTTCAACATGAAGGAAGCTGAGATACAGCAAAGGAGCCTAAAGGAGCTTCTTGAGACAATGGAATTCAGAGGGCTTCTGAAGAAGAGCACTTCTGTGAAG
AAGTACACTACTCAGCAGTTATTGCCTGAAGGGGTTCCCCCAGTTGTTCTCATAAAGCCCTTTTACATGCCTGAATCAGAATTCAGTACTAGTGAGGATG
AATTTGTGCGCTCAAATGATGTGATTATGAGAAAGGTGGAAGCAAAAGATGAAAACTTTGCTCCTGGAAGGAGTTACCAAGAAAGAACGGCCAAAAATTT
GAGGAGTAGAAGGATTGGAAAGGAAGAGGAACAAGTTTTAACAGTTGTTGTGCAGAGAGAAGGTCATGTGAAGGGAAAAAACAGGATGCCAAGAGAAGAT
GCTGGAGGGAAATCAGTTACCGGCAAAAATCGAGCTTGTAAAGAACAGAAGGAGGTAGTTCAAAGGGTGAAAGACAGTATCAAGAGTAATGCTAAGGTCA
TTGTGGACAGGAAAGTGGACAAGAATCAGAAGGTGGTGAACGAAGTACCAGAAGTGAAGGAGACTGTGAAGGTTAGAAGTGGATCTGCAAGAGTCGAGGA
TAATAAAACCAAAGTACCAACCTTTAGAGAAATGAGGGATTCTGGAAGTGGAAGAATTGGTTCAAGGAGTCAAAGAGTTGAGCAGCAAAGTGGAACTCGT
AATGCCAAACCCAAGAAGAAGAGAAAGAATGAGGAACAGAAAGAGAAGCTGGTGGATGATGTGAAAGAGAAAATAACAAAGTCTGCAGATAAGCCTGAAC
ATAAGGAGGTTGATCTCATTGAACCTGTTGTTGAAGGAAGTATCCCTATTACTTCAGGTTCACTGCAGACATTTAGAGAAGAAGAAACAAATCCATCTGC
ATTTCCACGTGAAGAACATAGTACTGAAACCTATAGCTCTCCTACACCAGAATGTGGAAAGCATCTTCAGTTGAAAACCAGTAAAGCAGAAGACAGCAAC
TTGAGAGGTAGAATACAATTCAAAACCTTCCTCTTAAGCAGCCGAGGGCTTCTCGTCCGCACAGAGCAGCAGCTCTTCCCTCTCCCTCTCCCAATTCAAA
ACCCCTTATCACCAGTGTCGAGAATAAACGATTCTGAGACATCATTATGTACGAAACTGTCGTTAGACTACGCAAATGAACTCATCGAATGCAGGCCGAG
TAGCACTATTCCAGACTCGCAAGCAAGAAGTCGTTATTATTGTATGCTTCCTCCATCTTGTGCATCACTTGATGATGATAATATAGATGAGGTGGTGGAA
CAAGTCTGCAATGGCATCGCCGAACTAAAGAACTACCTTAAGCTCAACAGTGTGAGCGCTATACTGGAAAGAGACTTGAAGAGCACAGGAGTGACGGTGA
GCCGGGTGTGGGAATCGGGTTGGAGGAATGGATTATGTACTGAAGAAGCTGAAGAAGCTGTGTCTAAATTAGAGAAGTTGATTCTTGATCACTTGATTGA
GGAGGTATTCACTTGA
AA sequence
>Lus10011100 pacid=23167505 polypeptide=Lus10011100 locus=Lus10011100.g ID=Lus10011100.BGIv1.0 annot-version=v1.0
MYRPFVTCEDPKGVVECGTIRKSSHRHKKKKISAGGGEHHHPNPSSFQLMEVSKGAKKLMNKVLIDEQHGSSKDESMAEDLLKGALHLKDSLVMLGKLQD
ASDYMSKLKQQKQLRERERRVIDDDDGFPSVMRRATSCREQDPNFQMMGFQRPRLSVDGGGDYIDELRMAIADSFDRQNLLSVEERASLLYRRRRDQEES
MTKSSDQTLSKVVEKKKDKSSSTSSNVIARLMGLEDILPPESPPKRMDIGVPNSNVRKLKQKKEDYLFNMKEAEIQQRSLKELLETMEFRGLLKKSTSVK
KYTTQQLLPEGVPPVVLIKPFYMPESEFSTSEDEFVRSNDVIMRKVEAKDENFAPGRSYQERTAKNLRSRRIGKEEEQVLTVVVQREGHVKGKNRMPRED
AGGKSVTGKNRACKEQKEVVQRVKDSIKSNAKVIVDRKVDKNQKVVNEVPEVKETVKVRSGSARVEDNKTKVPTFREMRDSGSGRIGSRSQRVEQQSGTR
NAKPKKKRKNEEQKEKLVDDVKEKITKSADKPEHKEVDLIEPVVEGSIPITSGSLQTFREEETNPSAFPREEHSTETYSSPTPECGKHLQLKTSKAEDSN
LRGRIQFKTFLLSSRGLLVRTEQQLFPLPLPIQNPLSPVSRINDSETSLCTKLSLDYANELIECRPSSTIPDSQARSRYYCMLPPSCASLDDDNIDEVVE
QVCNGIAELKNYLKLNSVSAILERDLKSTGVTVSRVWESGWRNGLCTEEAEEAVSKLEKLILDHLIEEVFT

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G24630 unknown protein Lus10011100
[exp]
0 1
AT3G09550 Ankyrin repeat family protein ... Lus10015037
[exp]
1.0 0.8864
AT1G31880 BRX, NIP3;1, NL... BREVIS RADIX, DZC (Disease res... Lus10007898
[exp]
2.0 0.8830
AT4G12560 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR G... Lus10017605
[exp]
6.9 0.8449
AT2G32260 ATCCT1 phosphorylcholine cytidylyltra... Lus10038368
[exp]
7.5 0.8124
AT2G32700 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_ho... Lus10011863
[exp]
8.1 0.8447
AT4G24560 UBP16 ubiquitin-specific protease 16... Lus10015893
[exp]
8.9 0.8147
AT2G20100 bHLH basic helix-loop-helix (bHLH) ... Lus10023669
[exp]
10.8 0.8477
AT2G32700 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_ho... Lus10022797
[exp]
13.8 0.8254
AT1G16380 ATCHX1 CATION EXCHANGER 1, Cation/hyd... Lus10024132
[exp]
16.2 0.8272
AT3G02300 Regulator of chromosome conden... Lus10013197
[exp]
18.2 0.8385

Lus10011100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.