Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29010 989 / 0 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT3G06860 770 / 0 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1) AT3G15290 114 / 9e-28 3-hydroxyacyl-CoA dehydrogenase family protein (.1) AT5G24310 86 / 2e-18 ABIL3 ABL interactor-like protein 3 (.1.2) AT5G42030 86 / 5e-18 ABIL4 ABL interactor-like protein 4 (.1) AT3G49290 79 / 2e-15 ABIL2 ABL interactor-like protein 2 (.1.2) AT2G46225 77 / 6e-15 ABIL1, ABI1L1 ABI-1-like 1 (.1.2.3) AT4G16800 57 / 3e-08 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT5G43280 53 / 2e-07 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT1G60550 50 / 5e-06 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043224 [exp] 1283 / 0 AT4G29010 1063 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10037495 [exp] 758 / 0 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10006502 [exp] 447 / 9e-150 AT3G06860 670 / 0.0 multifunctional protein 2 (.1) Lus10006501 [exp] 344 / 5e-110 AT3G06860 504 / 4e-175 multifunctional protein 2 (.1) Lus10043223 [exp] 289 / 5e-84 AT2G32230 433 / 2e-142 proteinaceous RNase P 1 (.1) Lus10034928 [exp] 148 / 4e-41 AT5G42030 87 / 4e-21 ABL interactor-like protein 4 (.1) Lus10023654 [exp] 153 / 6e-41 AT5G42030 91 / 3e-21 ABL interactor-like protein 4 (.1) Lus10020828 [exp] 117 / 9e-29 AT3G15290 465 / 4e-167 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Lus10012681 [exp] 114 / 1e-27 AT3G15290 462 / 5e-166 3-hydroxyacyl-CoA dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G082900 [exp] 1113 / 0 AT4G29010 1094 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Potri.010G011900 [exp] 769 / 0 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.008G220400 [exp] 751 / 0 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1) Potri.018G082600 [exp] 120 / 2e-30 AT2G46225 94 / 1e-22 ABI-1-like 1 (.1.2.3) Potri.001G398600 [exp] 110 / 2e-26 AT3G15290 446 / 9e-160 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Potri.012G016900 [exp] 85 / 2e-17 AT3G49290 353 / 5e-122 ABL interactor-like protein 2 (.1.2) Potri.002G165900 [exp] 77 / 6e-15 AT2G46225 397 / 5e-140 ABI-1-like 1 (.1.2.3) Potri.001G088100 [exp] 77 / 8e-15 AT3G49290 265 / 9e-88 ABL interactor-like protein 2 (.1.2) Potri.014G092300 [exp] 75 / 3e-14 AT2G46225 396 / 1e-139 ABI-1-like 1 (.1.2.3) Potri.003G142800 [exp] 74 / 7e-14 AT3G49290 292 / 3e-98 ABL interactor-like protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase CL0106 [flax] [poplar] 6PGD_C PF00725 [flax] [poplar] 3HCDH 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF02737 [flax] [poplar] 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10011102 pacid=23167566 polypeptide=Lus10011102 locus=Lus10011102.g ID=Lus10011102.BGIv1.0 annot-version=v1.0 ATGGCTAAGCCTCACGTGTCGATGGAGGTCGGGAATGACGGCGTCGCAGTCATCGCTATCTTCAATCCTCCGCGGCGCGTAGTACTCGACGGATTGAAGG AGAAGTTCGCCGAGGCCACCAGCAGAAACGACGTCAAGGCGATCGTTCTCACTGGCAAGGGTGGAAGATTTTCCGGCGGTTTTGACATCAATGTGTTCCA AAAGGTCCATGCAACCGGGGATGTTTCGATTATGCCTGATGTTTCTGTTGATCTTGTGGTCAACACTATTGAAGATTGCAAGAAGCCAGTTGTTGCAGCT GTGGAAGGATTGGCATTGGGTGGAGGCTTAGAACTAGCACTGGGATGTCATGCACGTATTGTTGCACCAAGAACGCAGCTTGGCTTACCAGAATTAACAC TTGGTGTAATTCCTGGTTTCGGAGGTACACAGCGACTCCCAAGGCTTGTAGGACTGTCGAAAGCCATTGATATGATGCTGTTATCCAAGCCGATCCTCTC TGAAGAAGGAAATAAACTTGGTCTTGTTGATGCTCTTGTCTCTTCTCAAGAGTTGCTGAAAGTATCTCGTGAATGGGCTTCGGACATTGCTGCCAGGCGC AAACCATGGGTCCGTTCCCTTCATAAGACTGATAAGATTGGTTCCCTAGCTGAGGCCCGCCAGGTCCTGCAAGCTGCTCGGCTACAAGCCAAGAAGATAG CTCCAAATATGCCTCAACATCTGGGATGCCTCGATTCAATTGAGGATGGCATTATTCATGGAGGTTATAGTGGGGTTCTAAAGGAAGCAAGAGTATTCAA GGAGTTAGTCTTATCGGATACTTCTAGGGGTCTGGTTCATTCATTTTTTGGCCAGCGTGCAACATCAAAGGTGCCTGGTGTAACTGATGTTGGCCTTAAG CCAAGGGAGATAAAGAAAGTGGCTGTAATTGGTGGAGGGTTAATGGGTTCTGGTATAGCTACTGCTCTAATTACAAGCAACATCTATGTTCTTCTGAAAG AAATCAACTCTGAGTATCTTCTCAAAGGGATAAAAACCATAGAAGGTAGGTCGCCTATTTACTCTGGTTTTAAAGCTGATCTGACTGGTAGTATTAGATT CCAAGCTTCCGATAAATCCATCTACAATCAGTTTGGTGGTGTTGGTCAGTATTTTTTTAGACTCATACTATTAAATGCAGGAAATGTTCGGAACTTGGAG ACAAGAGGAAAGTTGACGAAGGATAAGGCTAGCAAAGCTCTCTCAATGTTGAAAGGTGTTTTGGACTATTCTGACTTCAAGGATGTGGACATGGTCATAG AGGCAGTTATTGAGAGTATTCCTTTGAAACAAAAAATATTTGGCGAGCTTGAAAGTATTTGTCCTGGCCACTGCATTTTAGCATCAAATACATCCACCAT CGACTTGAATGTGATTGGAGAGAAGACCAATTCACAGGATCGCATAATAGGAGCACATTTTTTCAGTCCTGCTCATATAATGCCCCTTCTGGAGATTGTG AGGACGAACAGAACCTCTGCGCAAGCAATTCTTGATCTAATGACAGTTGGGAAGAACATAAAGAAAGTACCTGTTGTTGTGGGTAATTGCACTGGTTTCG CAGTCAATCGGACCTTTTTCCCCTATTCACAGAGTGCGCACTTGCTAGTCCATCTAGGTGTGGACGTCTTCAAAATTGACAGGGTTATCAGCAGCTTCGG ACTCCCTATGGGCCCTTTCCAGCTCCAGGATCTAGCTGGATATGGAGTAGCTGTGGCAGTGGGCAAAGAATTCAGCAGTTCATTCCCTGACCGTGTATTC AAGACGCCACTGATTGATCTGTTGATTAAAAATGGACGGAATGGTAAGAACAATGGAAGAGGATACTACATATACGAGAAGGGAAGCAAGCCAAAGCCGG ATCCCTCAGTAGGACCGATCATCGAGGAGTCCAGACGTATTGCTAATATCATGCCCAACGGAAAGCCGATTAATGTTACTGATGTGGAGATTATGGAGAT GATCCTCTTCCCAGTGGTAAACGAGGCATGTCGTGTACTCGAAGAGGGCGTGGTTGTTAGAGCATCAGACCTCGATATTGCATCTGTACTTGGAATGAGC TTCCCATCTTATCGGGGTGGGATCGTGTTCTGGGCGGACTTGATTGGGGCGAAACACATATACACAAGCTTGAAGAGGTGGTCAGAGTTGTATGGTGGGT TCTTCAAACCATCGAGGTACTTGGAAGAACGAGCGGCGAAGGGAGTGCCACTGGAACTTAAGGACTTGCAGTCTCAGCTACGCCGTGCAGCAGATTACTG GGAGAAAGGCTTCCAGAATGCTAAACAGAAGAAGCAGGTCGTGGAGAGCTCAAAAGAGTACGTGTGCAGAGCAGTGGTGGCTGTTGTGGATCATCTGGGC AGCGTTTCAGTCAGTTTGAACGCCACCATTTCTGACAAGACCAGTGGATTCTCTGGAGCTGAACTCAGGATTGATTCCCTTAAGCAAAGATTGCTTTCCT ATGAACTGTATGCACAGAAGATTGGTCTGACTAGAACGAGATGGTGCCCAAACCTGCCAAAGTTTCACCGCCGAATGACCATTGGATGGGAATTTACAGC TATTGACAGAGATGCTAGTCCTGTGGCTTCTTCAGCCAATGCTACCAATTACTCCATGGTTCCAGTTGGAGACAGCATCACAGTATGCGGGAAAGGGCAG ACTGCCACGTTCCATTTCCAGGTTTTGGGGAGATCCGGTGATCAACTTCCCCGCAATGAAGCGCACGATGGCTCTAGCGTGGAAACCCTGGATTGCCCAA GGCAACCCGCCTAA
AA sequence Show only first row Show all	>Lus10011102 pacid=23167566 polypeptide=Lus10011102 locus=Lus10011102.g ID=Lus10011102.BGIv1.0 annot-version=v1.0 MAKPHVSMEVGNDGVAVIAIFNPPRRVVLDGLKEKFAEATSRNDVKAIVLTGKGGRFSGGFDINVFQKVHATGDVSIMPDVSVDLVVNTIEDCKKPVVAA VEGLALGGGLELALGCHARIVAPRTQLGLPELTLGVIPGFGGTQRLPRLVGLSKAIDMMLLSKPILSEEGNKLGLVDALVSSQELLKVSREWASDIAARR KPWVRSLHKTDKIGSLAEARQVLQAARLQAKKIAPNMPQHLGCLDSIEDGIIHGGYSGVLKEARVFKELVLSDTSRGLVHSFFGQRATSKVPGVTDVGLK PREIKKVAVIGGGLMGSGIATALITSNIYVLLKEINSEYLLKGIKTIEGRSPIYSGFKADLTGSIRFQASDKSIYNQFGGVGQYFFRLILLNAGNVRNLE TRGKLTKDKASKALSMLKGVLDYSDFKDVDMVIEAVIESIPLKQKIFGELESICPGHCILASNTSTIDLNVIGEKTNSQDRIIGAHFFSPAHIMPLLEIV RTNRTSAQAILDLMTVGKNIKKVPVVVGNCTGFAVNRTFFPYSQSAHLLVHLGVDVFKIDRVISSFGLPMGPFQLQDLAGYGVAVAVGKEFSSSFPDRVF KTPLIDLLIKNGRNGKNNGRGYYIYEKGSKPKPDPSVGPIIEESRRIANIMPNGKPINVTDVEIMEMILFPVVNEACRVLEEGVVVRASDLDIASVLGMS FPSYRGGIVFWADLIGAKHIYTSLKRWSELYGGFFKPSRYLEERAAKGVPLELKDLQSQLRRAADYWEKGFQNAKQKKQVVESSKEYVCRAVVAVVDHLG SVSVSLNATISDKTSGFSGAELRIDSLKQRLLSYELYAQKIGLTRTRWCPNLPKFHRRMTIGWEFTAIDRDASPVASSANATNYSMVPVGDSITVCGKGQ TATFHFQVLGRSGDQLPRNEAHDGSSVETLDCPRQPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29010		AIM1	ABNORMAL INFLORESCENCE MERISTE...		Lus10011102 [exp]	0	1
AT4G29010		AIM1	ABNORMAL INFLORESCENCE MERISTE...		Lus10043224 [exp]	1.0	0.8710
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028075 [exp]	3.5	0.8528
AT4G13630			Protein of unknown function, D...		Lus10011854 [exp]	6.3	0.8607
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	6.7	0.8435
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10018705 [exp]	7.3	0.8307
AT4G33890			unknown protein		Lus10002119 [exp]	12.2	0.7365
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10037882 [exp]	14.0	0.8204
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10023672 [exp]	14.7	0.8591
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Lus10037448 [exp]	15.1	0.8243
AT1G03140			splicing factor Prp18 family p...		Lus10022049 [exp]	17.0	0.8058

Compare expression of checked genes

Lus10011102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.