Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29000 425 / 5e-142 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT2G20110 378 / 5e-124 CPP Tesmin/TSO1-like CXC domain-containing protein (.1.2) AT5G25790 252 / 5e-77 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G16160 111 / 2e-26 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT4G14770 110 / 3e-25 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) AT3G22760 110 / 4e-25 CPP SOL1 Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G22780 109 / 7e-25 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G04850 106 / 6e-24 CPP Tesmin/TSO1-like CXC domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043225 [exp] 742 / 0 AT4G29000 520 / 2e-179 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10023656 [exp] 453 / 4e-153 AT4G29000 491 / 2e-168 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011693 [exp] 257 / 2e-77 AT4G29000 330 / 3e-105 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10009494 [exp] 257 / 7e-77 AT4G29000 335 / 2e-106 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002033 [exp] 109 / 1e-24 AT3G22780 248 / 4e-71 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10006604 [exp] 108 / 1e-24 AT4G14770 446 / 1e-147 TESMIN/TSO1-like CXC 2 (.1) Lus10039358 [exp] 108 / 3e-24 AT3G22760 367 / 9e-113 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002895 [exp] 107 / 8e-24 AT3G22780 236 / 7e-68 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G160400 [exp] 478 / 5e-163 AT4G29000 518 / 2e-178 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G083000 [exp] 369 / 1e-122 AT4G29000 410 / 9e-139 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G039300 [exp] 263 / 4e-79 AT2G20110 269 / 2e-81 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.001G184800 [exp] 250 / 5e-76 AT2G20110 286 / 3e-90 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.008G156100 [exp] 110 / 4e-25 AT4G14770 522 / 1e-176 TESMIN/TSO1-like CXC 2 (.1) Potri.006G251200 [exp] 110 / 5e-25 AT3G22780 188 / 6e-50 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.010G083400 [exp] 110 / 5e-25 AT4G14770 504 / 6e-170 TESMIN/TSO1-like CXC 2 (.1) Potri.005G051100 [exp] 109 / 8e-25 AT4G14770 300 / 1e-90 TESMIN/TSO1-like CXC 2 (.1) Potri.018G030000 [exp] 108 / 3e-24 AT4G14770 207 / 1e-56 TESMIN/TSO1-like CXC 2 (.1) Potri.001G173600 [exp] 84 / 2e-16 AT3G22780 160 / 5e-41 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03638 [flax] [poplar] TCR Tesmin/TSO1-like CXC domain, cysteine-rich domain
Representative CDS sequence Show only first row Show all	>Lus10011103 pacid=23167542 polypeptide=Lus10011103 locus=Lus10011103.g ID=Lus10011103.BGIv1.0 annot-version=v1.0 ATGGAGGAGGGCGAAGGGGGCGAATTCCCTCCAAATAACGCTCCCCAATCGGAGGCTCAACAACCTTTAGATGCCCCTGCGAAGAAGCTTGCTAGGCAGC TGGATTTCACGCACACCACTTCCGTGGCTCTCCCAGACCATTCGCAATCTTCGCAGCAGCAGCAGCCAGCCGGCGGCGGGGGGGGGGGGCAGTNNNNNNG TGGTTGGTTTTCCAGCCGATTGCCAAACCGTTGGTTCCCGGGGCGGTTACTCAAACCCTGCCGTATCTCGTTCCAACGGCGGCGTCTCAGCCTCCGAATC TGCAGCATGAACAAGTTCTTTCAGTTGTGCAGCCTGAGGGGTCGGAGAATCTTCATATTTGGAGTCGTGTCAATCTACCCTGGTGGAGAGTCATCTGAAG TGTATTCAAAGGTTCAATACATAGTTGGTAGAGTTTCAGTTGCTGACTACCAAATACATGTAAATTTGCGGATTAACATGATGGTTGATAGTTGTAAGTC CAGTTTGGAATTTTTGTGTGCTTTTGGAGATGTGTGGAGTCTCCTCAGAGCCACCTTAAAAAGTTTGTCTGGACTTACAACTATATTTGAGTACTGTGAG TGCTTTGCGTCTGGAACGTATTGTGATGGATGCAATTGCACAGGTTGCTTCAACAATGCAGACAATGAATCTTCCAGGCGAGAAGCAATCAAAGTAACAT TGGAGCGTAATCCAAATGCTTTCAGGCCAAAAATTGCAAGCAGCCCACATGGGATACAAGATAAGCGGGAGGAAAAAGGGGAAGTAATAGCCTTGGGAAG GCATAACAAGGGATGCCATTGTAAAAAGTCAGGATGCCTAAAGAAGTACTGTGAATGTTTCCAAGCAAACATTCTCTGCTCTGAAAATTGTAGGTGCAAC GACTGCAAGAATTTTGAAGGAAGCGAGGAACGGCAGGCTCTCTTTCACAATGACCATGCCAACAACATTACATACATTCAGCAAGCCGCAAATGCTGCTA TAACGGGAGCTATTGGTACATCTGGGTATACATCCCCTCCTGTATCTCGGAAGAGGAAAGGTCCGGAATCAATTTTCAACCAAAAGGGCAGGGACGGGGC CCTTCACAGGCCTGGACATATTCAGCAGGCTAACCAAATCAGAGCTCCAGCACAGTGTTCAAACCCTGTTGTTCGTGGTACTATGGCAACATTGACCCCT TCAAAATTCACATACAGGTCTCTGTTAGCAGACATTATCCAACCACAGGACATAAAAGAACTTTGTTCTGTGCTGGTGGTTTTATCCAGAGAAGCTGCTA AAACGCTGGACGAACAAAGAAGTGAAGAAGAGAAGCAGTTAGGGGACCAAAGAAAAGCTTCTATCGCATCATCAAGTGATCAAGAAAGGTTGCAGAACAA GAAAGAATCAGATGCTGAGAAAAGCGAAGGTCACAATGATTGTTCTGCTACGGATAATGCAGGTCCTGATAGTTCCACATCGGAAGGCGTAGATGCGCCT AAATCGGAACCAATGTCACCAGGGACTTTGGCCCTTATGTGTGATGAAAAAGATACAATGTTTATGGAAGCAGCTGCTTCTTCCTCCAGTGGTTTGACAG ACCAGGGTGGCAATGGCAATGCAGTGCTGCAATTGCCTAAGAAAGTCGGCGGCTTGACAGAGACGTATGCAGAGCAAGAAAGGGTGGTACTAGCCAAGTT CAGAGATTGCTTAAATAAGCTCATCACCATAGGAGAGAATATAAAAGGCAAGTTCCTTTCTTTCCTCTTTTCTTCTGAAATTTTTTGTTGTTCTTGTTGT TGTTGCACTTGTTGCCAGTGTTAA
AA sequence Show only first row Show all	>Lus10011103 pacid=23167542 polypeptide=Lus10011103 locus=Lus10011103.g ID=Lus10011103.BGIv1.0 annot-version=v1.0 MEEGEGGEFPPNNAPQSEAQQPLDAPAKKLARQLDFTHTTSVALPDHSQSSQQQQPAGGGGGGQXXXGWFSSRLPNRWFPGRLLKPCRISFQRRRLSLRI CSMNKFFQLCSLRGRRIFIFGVVSIYPGGESSEVYSKVQYIVGRVSVADYQIHVNLRINMMVDSCKSSLEFLCAFGDVWSLLRATLKSLSGLTTIFEYCE CFASGTYCDGCNCTGCFNNADNESSRREAIKVTLERNPNAFRPKIASSPHGIQDKREEKGEVIALGRHNKGCHCKKSGCLKKYCECFQANILCSENCRCN DCKNFEGSEERQALFHNDHANNITYIQQAANAAITGAIGTSGYTSPPVSRKRKGPESIFNQKGRDGALHRPGHIQQANQIRAPAQCSNPVVRGTMATLTP SKFTYRSLLADIIQPQDIKELCSVLVVLSREAAKTLDEQRSEEEKQLGDQRKASIASSSDQERLQNKKESDAEKSEGHNDCSATDNAGPDSSTSEGVDAP KSEPMSPGTLALMCDEKDTMFMEAAASSSSGLTDQGGNGNAVLQLPKKVGGLTETYAEQERVVLAKFRDCLNKLITIGENIKGKFLSFLFSSEIFCCSCC CCTCCQC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10011103 [exp]	0	1
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10005782 [exp]	5.5	0.8783
AT3G46960			RNA helicase, ATP-dependent, S...		Lus10017528 [exp]	9.8	0.8982
					Lus10004294 [exp]	23.5	0.8741
AT3G58560			DNAse I-like superfamily prote...		Lus10016206 [exp]	28.9	0.8648
AT1G16800			P-loop containing nucleoside t...		Lus10035717 [exp]	34.1	0.8738
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Lus10010313 [exp]	35.5	0.8692
AT2G01210			Leucine-rich repeat protein ki...		Lus10034108 [exp]	38.1	0.8493
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Lus10031945 [exp]	38.3	0.8698
AT4G10920		KELP	transcriptional coactivator p1...		Lus10030245 [exp]	40.0	0.8316
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038453 [exp]	41.6	0.8531

Compare expression of checked genes

Lus10011103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.