Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29100 127 / 2e-36 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 112 / 5e-31 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G20640 61 / 5e-12 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 56 / 2e-10 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 53 / 2e-09 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT2G31730 46 / 3e-07 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G49830 45 / 1e-06 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 44 / 3e-06 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G31050 44 / 4e-06 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27660 37 / 0.0008 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023669 [exp] 154 / 6e-47 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10034940 [exp] 152 / 1e-46 AT4G29100 171 / 4e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10038550 [exp] 61 / 8e-12 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014807 [exp] 60 / 1e-11 AT3G20640 179 / 5e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007613 [exp] 59 / 2e-11 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 57 / 9e-11 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013874 [exp] 53 / 3e-09 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10025599 [exp] 47 / 2e-07 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10027064 [exp] 47 / 2e-07 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G083700 [exp] 139 / 1e-41 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G051600 [exp] 86 / 3e-21 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G185900 [exp] 82 / 9e-20 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G033000 [exp] 64 / 5e-13 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.004G029100 [exp] 62 / 3e-12 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.001G410600 [exp] 58 / 5e-11 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.011G129500 [exp] 55 / 6e-10 AT3G20640 289 / 3e-93 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G094300 [exp] 54 / 7e-10 AT3G19500 161 / 2e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G299300 [exp] 54 / 8e-10 AT3G19500 152 / 4e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G098900 [exp] 52 / 5e-09 AT1G31050 209 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011105 pacid=23167507 polypeptide=Lus10011105 locus=Lus10011105.g ID=Lus10011105.BGIv1.0 annot-version=v1.0 ATGCAGGCTCTGAGCTTGCCCTACTTGGGCAGTGGATCCTCCAACTTGATGCCTCAACATTACCAACATTCTATTGTTCAAGGGGAAAGGAACTGCGTCT TCCCAGAACACCCTGGCCAGCTCTTGAATGATGGCTGTCGGAAGAGGAAAGCAGCCTCCGATGACCAACAGGAGTGCTGCAATAATAATATTGATCATGA GCCAAACAAGGACTTGAGGAGTAGGGGGTTGTGCCTTGTCCCCGTCTCTTGCACCATGCAAGTTGGTAATGACAATGGAGCTGATTACTGGGCTCCATCC CTCGGAGGAGGATTCCGGTGA
AA sequence Show only first row Show all	>Lus10011105 pacid=23167507 polypeptide=Lus10011105 locus=Lus10011105.g ID=Lus10011105.BGIv1.0 annot-version=v1.0 MQALSLPYLGSGSSNLMPQHYQHSIVQGERNCVFPEHPGQLLNDGCRKRKAASDDQQECCNNNIDHEPNKDLRSRGLCLVPVSCTMQVGNDNGADYWAPS LGGGFR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Lus10011105 [exp]	0	1
AT1G27461			unknown protein		Lus10018671 [exp]	2.0	0.8089
AT1G62700	NAC	ANAC026, VND5	VASCULAR RELATED NAC-DOMAIN PR...		Lus10004338 [exp]	2.8	0.7481
AT1G12150			Plant protein of unknown funct...		Lus10039107 [exp]	2.8	0.8127
AT1G02800		ATCEL2	cellulase 2 (.1)		Lus10001666 [exp]	8.1	0.6999
AT5G49950			alpha/beta-Hydrolases superfam...		Lus10035741 [exp]	13.2	0.7504
AT2G45960		PIP1;2, ATHH2, ...	TRANSMEMBRANE PROTEIN A, NAMED...		Lus10007568 [exp]	14.0	0.7125
AT1G50920			Nucleolar GTP-binding protein ...		Lus10007958 [exp]	18.8	0.6689
					Lus10007072 [exp]	22.7	0.6412
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Lus10009163 [exp]	29.9	0.7554
AT2G46910			Plastid-lipid associated prote...		Lus10010277 [exp]	31.6	0.7500

Compare expression of checked genes

Lus10011105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.