Plant FIBer expression Database

Lus10011106 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G083700
[exp]
44 / 5e-05 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10011106 pacid=23167508 polypeptide=Lus10011106 locus=Lus10011106.g ID=Lus10011106.BGIv1.0 annot-version=v1.0
ATGAAGCAGAGCTCAGCGGTGCAGCAACACCAGCAGATGATGATGATGGTGGCCGCCGCCGGAAACCCTACCAACTGGTGGACAACCATCTGCCCTCCAC
CGTCGACCTCTCACGAAACCCTTTCCGCTAATAATCTCATTACTGCTACTCTTTCTCCCTCCTCTCCACTTCCTTTGCCTTCATGGATTGATACCACTAA
CAGCAGCACACAAGATCGTCATCATCTACCTGAATCCTGGAGTCAACTTCTCTCGGGTGGATTGATGGTGGGAGATGAAGATAAGGGGAACCACCAAATA
ATGATGAAGCAAGAAAGCTCAGCTGGAAGCTATGTGATGAGTTGCTATGATGCAAACCAAGATCATGTCGCTAACAACAGCGATTTCTCCGCGGTCAACC
AGATCGCAGTTGGAGCATCATCATCGGATCTCGAGTTAAGGCATCCTCCTCCGCCGCTCCCTAAGGATCAATCGCCGGAGAGTAGCAGCATAAAGAATGG
AAGTAGTGGTGGTAGTGGTGGTGGGATAGTGAAGAAAGCTAGGGTTCAAGTACCATCTGCTTCGTCGTCGACATCCACTCAATTTGCTGCCGTGAAGGTA
ATTAAATTTAACTCGAAAATCTACTTATTCCTAGCTAGCTAG
AA sequence
>Lus10011106 pacid=23167508 polypeptide=Lus10011106 locus=Lus10011106.g ID=Lus10011106.BGIv1.0 annot-version=v1.0
MKQSSAVQQHQQMMMMVAAAGNPTNWWTTICPPPSTSHETLSANNLITATLSPSSPLPLPSWIDTTNSSTQDRHHLPESWSQLLSGGLMVGDEDKGNHQI
MMKQESSAGSYVMSCYDANQDHVANNSDFSAVNQIAVGASSSDLELRHPPPPLPKDQSPESSSIKNGSSGGSGGGIVKKARVQVPSASSSTSTQFAAVKV
IKFNSKIYLFLAS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10011106
[exp]
0 1
AT5G50350 unknown protein Lus10033401
[exp]
1.0 0.8964
AT3G16500 AUX_IAA IAA26, PAP1 indole-3-acetic acid inducible... Lus10025817
[exp]
12.7 0.7662
AT2G33310 AUX_IAA IAA13 auxin-induced protein 13 (.1.2... Lus10023719
[exp]
26.5 0.8084
AT1G25280 TUB AtTLP10 tubby like protein 10 (.1.2.3) Lus10028579
[exp]
33.8 0.8311
AT5G12840 CCAAT NF-YA1, ATHAP2A... "nuclear factor Y, subunit A1"... Lus10016411
[exp]
44.0 0.8020
AT2G45720 ARM repeat superfamily protein... Lus10041369
[exp]
52.2 0.8199
AT3G26720 Glycosyl hydrolase family 38 p... Lus10012578
[exp]
64.0 0.8074
AT4G22758 unknown protein Lus10000386
[exp]
72.2 0.8103
AT3G50790 esterase/lipase/thioesterase f... Lus10001673
[exp]
82.5 0.7713
AT5G08335 ATICMTB, ATSTE1... ARABIDOPSIS THALIANA ISOPRENYL... Lus10030398
[exp]
95.2 0.7903

Lus10011106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.