Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28830 328 / 1e-115 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043228 [exp] 378 / 2e-135 AT4G28830 352 / 3e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G083800 [exp] 330 / 2e-116 AT4G28830 331 / 8e-117 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05175 [flax] [poplar] MTS Methyltransferase small domain
Representative CDS sequence Show only first row Show all	>Lus10011107 pacid=23167565 polypeptide=Lus10011107 locus=Lus10011107.g ID=Lus10011107.BGIv1.0 annot-version=v1.0 ATGAAGCTGAAGCAATTAGAAAGCCTGCTTGGCAATCTTCAACAATTCTCCAACCCAAAGGTGGAGCTGGAGCAGTATCCCACTGGACCTCATATCGCTT CCCGCATGCTCTTCACTGCCGAGAATTCATTTGGGGATGTGACTGATAAGGTGGTTGCAGATTTTGGCTGCGGTTGTGGGACATTAGGTGCTGCTGCTGC TCTCATGGGTGCAGAACAGGTGATCGGTATCGACATTGATTCAGAATCTCTCGAGATGGCAACAGCGAATGCTGAGGATCTCGAGCTGGACATAAACTTT GTACAGTGTGACATCAGCTGGCTAGCATTGAGAGGTTGTGTTGTTGATACAGTTGTAATGAACCCTCCATTTGGAACACGGAAGAAAGGCGCGGATATGG AGTTCCTCTCTGCGGCCTTAAAAGTTGCTTCTCAAGCGGTTTATTCTTTGCACAAAACATCAACCAGAGAGCATATTAAAAGAGCAGCCCTGCTGAATTT AGGTGCTAAAAGTGCTGAAGTTTTGTGTGAGCTCCGGTATGATCTTCCAAAAATATACAAGTTCCATAAGAAGAAGGAGATGGATATAGCAGTAGACCTT TGGCGATTCGAGCCAAAGCATTGA
AA sequence Show only first row Show all	>Lus10011107 pacid=23167565 polypeptide=Lus10011107 locus=Lus10011107.g ID=Lus10011107.BGIv1.0 annot-version=v1.0 MKLKQLESLLGNLQQFSNPKVELEQYPTGPHIASRMLFTAENSFGDVTDKVVADFGCGCGTLGAAAALMGAEQVIGIDIDSESLEMATANAEDLELDINF VQCDISWLALRGCVVDTVVMNPPFGTRKKGADMEFLSAALKVASQAVYSLHKTSTREHIKRAALLNLGAKSAEVLCELRYDLPKIYKFHKKKEMDIAVDL WRFEPKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10011107 [exp]	0	1
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10030154 [exp]	2.0	0.9351
AT1G33780			Protein of unknown function (D...		Lus10009463 [exp]	2.2	0.9327
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Lus10034468 [exp]	2.4	0.9478
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	3.7	0.9451
AT1G17330			Metal-dependent phosphohydrola...		Lus10040985 [exp]	4.2	0.9315
AT2G39740		HESO1	HEN1 suppressor 1, Nucleotidyl...		Lus10001012 [exp]	4.5	0.9281
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	4.6	0.9420
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Lus10032849 [exp]	5.3	0.9209
AT4G40030			Histone superfamily protein (....		Lus10000284 [exp]	5.6	0.9082
AT4G17720			RNA-binding (RRM/RBD/RNP motif...		Lus10025743 [exp]	6.0	0.9224

Compare expression of checked genes

Lus10011107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.