Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19580 622 / 0 glyoxal oxidase-related protein (.1) AT1G67290 610 / 0 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) AT1G75620 414 / 3e-139 glyoxal oxidase-related protein (.1) AT1G19900 395 / 6e-132 glyoxal oxidase-related protein (.1) AT3G57620 389 / 1e-129 glyoxal oxidase-related protein (.1) AT1G14430 383 / 5e-127 glyoxal oxidase-related protein (.1) AT3G53950 359 / 5e-118 glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043230 [exp] 1056 / 0 AT5G19580 620 / 0.0 glyoxal oxidase-related protein (.1) Lus10034959 [exp] 889 / 0 AT1G67290 619 / 0.0 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10011111 [exp] 749 / 0 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Lus10043231 [exp] 748 / 0 AT5G19580 647 / 0.0 glyoxal oxidase-related protein (.1) Lus10011110 [exp] 720 / 0 AT5G19580 597 / 0.0 glyoxal oxidase-related protein (.1) Lus10012979 [exp] 719 / 0 AT5G19580 619 / 0.0 glyoxal oxidase-related protein (.1) Lus10012981 [exp] 570 / 0 AT1G67290 412 / 3e-139 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10015949 [exp] 424 / 4e-143 AT3G57620 654 / 0.0 glyoxal oxidase-related protein (.1) Lus10030798 [exp] 402 / 2e-134 AT1G14430 623 / 0.0 glyoxal oxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G160800 [exp] 706 / 0 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 705 / 0 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Potri.002G027000 [exp] 440 / 3e-149 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235500 [exp] 435 / 2e-147 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 431 / 7e-146 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 412 / 3e-138 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.010G034200 [exp] 398 / 8e-133 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 392 / 2e-130 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G047701 [exp] 383 / 4e-127 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.016G103400 [exp] 376 / 8e-125 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF09118 [flax] [poplar] DUF1929 Domain of unknown function (DUF1929) CL0159 [flax] [poplar] PF07250 [flax] [poplar] Glyoxal_oxid_N Glyoxal oxidase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10011109 pacid=23167509 polypeptide=Lus10011109 locus=Lus10011109.g ID=Lus10011109.BGIv1.0 annot-version=v1.0 ATGTTGGGTGGGAGGCTCAAGGACAACTTTGCCGGCGGCGTCGGCGGGGAGACTCCGTTGGATAACCCCGGCGCGTACAATGGAGAGTGGGAGCTGTTCT CCAAGAACTCCGGAGTGTCGGCGATGCATTCGATATTGCTGCCCAAGGTTGAGAAGGTGTTGATGTATGACTCTACGATATGGAGAATTTCGAATATTGT GTTGCCGAATGGGGAGTGTCGTGTGTTGGATGAGAAGACTGGGGAGAAGGATTGTTATGCTCACTCGGTTTGGTTTGATACCCACGCTGAAAACCTTATT CCACTCGAGTTGAAGACGGATACATGGTGTTCGTCGGGAGGGCTGACGCTGGAAGGGCAGTTTGTGAGCACGGGGGGTTTCCAGGGAGGTGCGAACACGG TTAGATATTTGGATACATGCAAAGACTGCACTTGGAGAGAATACCCTACTGCTCTTTCTGCCCCAAGATGGTACTCAACACAGGCCCAATTAGCAGACGG CAGGTTCATCGTAGTGGGAGGCAGAGACGCACAGAGCTTCGAGTACATCCCGCCGGAGGGCAAACAAAACGACAAGCCCTTCTTCCTCGACTTACTAAAA CAAACCCTCGATCCAGAAGAGAACAATCTCTACCCCTTCGTCTTCCTCTCCACCGACTCCAACGTCTTCATCTTCGCCAACAACCGCTCCGTCCTTCTCA ACCCAAACACCAACACCGTCGTCAAGGAGTTACCCATTCTCCCCGGCGGCCACCGCAACTACCCCGCAAGCGGCATGTCCGTCATCCTTCCAATCGACCT CGAAAACCCGACCGCCGCCACCGTCCCCGCCGAAGTCATGGTCTGCGGTGGATCCGCCCACATCGACTCCTACGGCAAGGCCAGCCAGGGGGTCTACTAC GAAACCTTAGAAGACTGTGGCCGCCTCAAAATCACAGATCCAAACCCTGTATGGGAGCGAGATCTGATGCCTAGCCCTCGAATCATGGGCGATATGATGC TCTTACCTTCCGGAGAGGTCCTAATCGTTAACGGCGCTATGAGGGGAGCTTCCGGTTGGGGTTTCGCAAGGGACCCCAATTTCACCCCTGTGATCTACAC TCCGGGAGCCAAATTGGGGACCAGATTCCGCCAATTGAATCCCTCCACAATCCCTAGAATGTACCATTCCTCCACCGTCGTCCTCCCCGACGCCAGGGTG ATGATTTCCGGCAGCAACACAAACAACGGCTACATCTACGACGCCATGTACCCGACGGAATTGAGGGTCGAGAAATTCTCGCCGCCTTACTTGGATCCTG CTCTTGCCTACAAAAGGCCCGAGATCATGAACGGGGAAGCGATTGCCCAGTTCGGGTACAAGGCGAAGATTACGATTCAGGCGAAGCTGAAACCGACGGT GGCGGCGATGATGTTGATGAATCTGAAGGTGTCGATCAACGTCCCTGGGTTTAGTACTCACGGCGTGACCATGAACCAGAGGTTGATAATGTTGGGTTTG GATTCGGCGAATCCGACGGCGGGGAAGGATGGGGTTTTCGACGTCGTTGCGACAACTCCTCCGAGTAGTGCGGTGGCTCCGACGGGGTATTATATGCTAA GCGTTGTTTATCAGGGCGTTCCTAGCAAAGCCGTCTGGATCCAGCTCAAGTGA
AA sequence Show only first row Show all	>Lus10011109 pacid=23167509 polypeptide=Lus10011109 locus=Lus10011109.g ID=Lus10011109.BGIv1.0 annot-version=v1.0 MLGGRLKDNFAGGVGGETPLDNPGAYNGEWELFSKNSGVSAMHSILLPKVEKVLMYDSTIWRISNIVLPNGECRVLDEKTGEKDCYAHSVWFDTHAENLI PLELKTDTWCSSGGLTLEGQFVSTGGFQGGANTVRYLDTCKDCTWREYPTALSAPRWYSTQAQLADGRFIVVGGRDAQSFEYIPPEGKQNDKPFFLDLLK QTLDPEENNLYPFVFLSTDSNVFIFANNRSVLLNPNTNTVVKELPILPGGHRNYPASGMSVILPIDLENPTAATVPAEVMVCGGSAHIDSYGKASQGVYY ETLEDCGRLKITDPNPVWERDLMPSPRIMGDMMLLPSGEVLIVNGAMRGASGWGFARDPNFTPVIYTPGAKLGTRFRQLNPSTIPRMYHSSTVVLPDARV MISGSNTNNGYIYDAMYPTELRVEKFSPPYLDPALAYKRPEIMNGEAIAQFGYKAKITIQAKLKPTVAAMMLMNLKVSINVPGFSTHGVTMNQRLIMLGL DSANPTAGKDGVFDVVATTPPSSAVAPTGYYMLSVVYQGVPSKAVWIQLK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19580			glyoxal oxidase-related protei...		Lus10011109 [exp]	0	1
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10042584 [exp]	8.9	0.8514
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10042585 [exp]	9.7	0.8506
AT4G21610		LOL2	lsd one like 2 (.1)		Lus10007343 [exp]	11.6	0.8370
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10018191 [exp]	17.4	0.8478
AT1G19990			unknown protein		Lus10033141 [exp]	24.3	0.8469
AT4G35880			Eukaryotic aspartyl protease f...		Lus10028410 [exp]	29.2	0.8306
AT3G46430			unknown protein		Lus10004950 [exp]	31.3	0.7860
AT5G03670			unknown protein		Lus10035565 [exp]	32.3	0.8349
AT2G32840			proline-rich family protein (....		Lus10003918 [exp]	32.4	0.8294
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10000542 [exp]	34.9	0.8352

Compare expression of checked genes

Lus10011109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.