Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19580 652 / 0 glyoxal oxidase-related protein (.1) AT1G67290 641 / 0 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) AT1G75620 430 / 8e-145 glyoxal oxidase-related protein (.1) AT1G19900 410 / 3e-137 glyoxal oxidase-related protein (.1) AT1G14430 402 / 9e-134 glyoxal oxidase-related protein (.1) AT3G57620 390 / 4e-129 glyoxal oxidase-related protein (.1) AT3G53950 373 / 1e-122 glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043231 [exp] 1115 / 0 AT5G19580 647 / 0.0 glyoxal oxidase-related protein (.1) Lus10011109 [exp] 748 / 0 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1) Lus10034959 [exp] 744 / 0 AT1G67290 619 / 0.0 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10043230 [exp] 741 / 0 AT5G19580 620 / 0.0 glyoxal oxidase-related protein (.1) Lus10012979 [exp] 702 / 0 AT5G19580 619 / 0.0 glyoxal oxidase-related protein (.1) Lus10011110 [exp] 678 / 0 AT5G19580 597 / 0.0 glyoxal oxidase-related protein (.1) Lus10012981 [exp] 509 / 3e-177 AT1G67290 412 / 3e-139 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10015949 [exp] 432 / 2e-145 AT3G57620 654 / 0.0 glyoxal oxidase-related protein (.1) Lus10030798 [exp] 418 / 9e-140 AT1G14430 623 / 0.0 glyoxal oxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G160800 [exp] 745 / 0 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 737 / 0 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Potri.002G027000 [exp] 453 / 8e-154 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235500 [exp] 441 / 3e-149 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 432 / 2e-145 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 430 / 1e-144 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G047701 [exp] 409 / 1e-136 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 406 / 2e-135 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.010G034200 [exp] 404 / 2e-134 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1) Potri.016G103400 [exp] 380 / 1e-125 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF09118 [flax] [poplar] DUF1929 Domain of unknown function (DUF1929) CL0159 [flax] [poplar] PF07250 [flax] [poplar] Glyoxal_oxid_N Glyoxal oxidase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10011111 pacid=23167499 polypeptide=Lus10011111 locus=Lus10011111.g ID=Lus10011111.BGIv1.0 annot-version=v1.0 ATGGACAAGGAACTCGACGACCTCTTGACCAAGGACGGCCAACACAAGGTGGAAGCCAGCGGCAGCGGCGCCAGCCTCACTGAGTCGGAGGTGAAGGCCC TCGCTGCCGACGGCGGGTTGAAAGTGGAGGCCGGCGGAGCAGGAGGTGGTGCCACCGCGTTCGGGACGACCGGTGCCACGACGGCCAAGGGGAAGAGGGC CCCAAAAACCCACCTCGTGAACCCCACGGGGTTCAAGGGGAAGTGGGAGTTGTTCTGCAAGAATACAGGGGTTTCGTCCATGCATGCAATTTTGTTGCCC AAGGTTAATAAGGTGTTGATGTACGACGCCACCATTTGGAGGATCTCCGGGATGAAGCTGCCCGTCGGAGAATGTCGGCTGTTGGATGAGAAGACCGGCG AGAAGGATTGCTATGCTCATTCCGTTTTGCTTGACATCAATACAGCCAAAATCACCCCGCTTGAGCTTCGTACGGATACCTGGTGTTCATCTGGAGGATT GACACTGGAAGGGAACCTAGTGAGTACCGGTGGTTTCCAAGGTGGTGCTAATACAGTGAGATACTTGGACACTTGTGAAAACTGCGATTGGAGGGAATAC CCCACCGCCCTTGCCGCTCCTAGATGGTACGCTACGCAGGCGCAGCTGGCGGACGGGAGAATGATAGTGGTCGGAGGCAGAGACGCCCACAGCTACGAGT TCATCCCGGCGGAAGGGCAGCACAACCCAGCTCCGATCAACTTCAAATTCCTAACCGAAACCACCGACAAGGACGAGAACAACCTCTACCCATTCGTCCA CCTCAGCACTGACGGCAACGTATTCATCTTCGCCAACAATCGCGGCGTCCTCCTCGACCCAAACACAAACGCCATCGTCAGGGAAATCCCCCAGCTTCTA GGAGGCCATCGCAATTACCCCGCCGCCGGCCAATCAGTCCTCCTCCCTTTGAAAATCCATGGCGGAAACAAGGGCCCCATCCCCGCCGAGGTCCTCATCT GCGGTGGATCCGCCCACGTCGATTCCTACACCAAGGCCAGCGAAGGAGTCTTCTACGCCGCCTTGCAGGATTGCGGTAGGATGCGAATCACCGACCCTAA GCCGGTCTGGAAGAGAGAGCTCATGCCGTCGCCTCGATTGATGGGAGATATGTCGCTCCTCCCTTCCGGAGAAGTCCTCCTCATCAACGGCGTTAAAAGG GGATCTTCAGGTTGGGGATTCGCCAGAGAGCCTAATTTCATCCCTGCTCTCTACAATCCGAGAGTCAAAAGAGGCGAGCGGTTTATCGAACTCGCTCCGA CTGACATTCCTAGGGTTTATCACTCCACCGCCACCGTTCTTCAGGACGGAAAGGTTCTGATTGCCGGAAGCAACACGAACAACGGATACGTCTACGATGC GATGTTCCCGACGGAATTGAGAGCCGAGAAATTCTCCCCGCCCTACCTGGACCCTGCACTGGAGAAATTCAAGCCGGTGATCGACGCTGCGGCTGCTCCG ACGAAACTAGCGTATAACGTGAAGATCAACGTGCAGATTAAGTTCAAAGACACACAGCAGGTTGTGCAGCAGGAGAATTTGAAGGTGACGATGTATGTTC CGGCTTTCACCACCCACAGCGTGTCCATGAATATGAGGCTTTTGGATTTGGGCCTAGAGTCCGTCAAGCCCAATGGGGCTGGAGTTTACATCATTGATGT CTGGACCCCACCGGATACCAAGGTTGCTCCCACTGGATATTACTTGCTGTTTGTTGTTCACCAGGGAGTTCCTAGCGAAGGAATCTGGGTTCAGATTAAC GGCTAG
AA sequence Show only first row Show all	>Lus10011111 pacid=23167499 polypeptide=Lus10011111 locus=Lus10011111.g ID=Lus10011111.BGIv1.0 annot-version=v1.0 MDKELDDLLTKDGQHKVEASGSGASLTESEVKALAADGGLKVEAGGAGGGATAFGTTGATTAKGKRAPKTHLVNPTGFKGKWELFCKNTGVSSMHAILLP KVNKVLMYDATIWRISGMKLPVGECRLLDEKTGEKDCYAHSVLLDINTAKITPLELRTDTWCSSGGLTLEGNLVSTGGFQGGANTVRYLDTCENCDWREY PTALAAPRWYATQAQLADGRMIVVGGRDAHSYEFIPAEGQHNPAPINFKFLTETTDKDENNLYPFVHLSTDGNVFIFANNRGVLLDPNTNAIVREIPQLL GGHRNYPAAGQSVLLPLKIHGGNKGPIPAEVLICGGSAHVDSYTKASEGVFYAALQDCGRMRITDPKPVWKRELMPSPRLMGDMSLLPSGEVLLINGVKR GSSGWGFAREPNFIPALYNPRVKRGERFIELAPTDIPRVYHSTATVLQDGKVLIAGSNTNNGYVYDAMFPTELRAEKFSPPYLDPALEKFKPVIDAAAAP TKLAYNVKINVQIKFKDTQQVVQQENLKVTMYVPAFTTHSVSMNMRLLDLGLESVKPNGAGVYIIDVWTPPDTKVAPTGYYLLFVVHQGVPSEGIWVQIN G

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19580			glyoxal oxidase-related protei...		Lus10011111 [exp]	0	1
AT5G26330			Cupredoxin superfamily protein...		Lus10006680 [exp]	3.5	1.0000
AT2G43820		SGT1, ATSAGT1, ...	UDP-glucose:salicylic acid glu...		Lus10006721 [exp]	3.5	1.0000
AT2G40070			unknown protein		Lus10008717 [exp]	5.2	1.0000
					Lus10010414 [exp]	5.3	1.0000
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	5.9	1.0000
					Lus10010663 [exp]	6.0	1.0000
					Lus10014229 [exp]	6.9	1.0000
AT2G39518			Uncharacterised protein family...		Lus10031304 [exp]	7.3	1.0000
AT4G03230			S-locus lectin protein kinase ...		Lus10031602 [exp]	7.7	1.0000
					Lus10035743 [exp]	9.2	1.0000

Compare expression of checked genes

Lus10011111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.