Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28850 365 / 1e-127 ATXTH26, XTH26, XTR18 xyloglucan endotransglucosylase/hydrolase 26 (.1) AT4G25810 306 / 2e-104 XTH23, XTR6 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) AT5G57550 303 / 3e-103 XTR3, XTH25, EXGT-A5 xyloglucan endotransglycosylase 3, xyloglucan endotransglucosylase/hydrolase 25 (.1) AT5G57530 299 / 1e-101 AtXTH12, XTH12 xyloglucan endotransglucosylase/hydrolase 12 (.1) AT3G23730 297 / 7e-101 XTH16 xyloglucan endotransglucosylase/hydrolase 16 (.1) AT5G57560 294 / 8e-100 XTH22, TCH4 xyloglucan endotransglucosylase/hydrolase 22, Touch 4, Xyloglucan endotransglucosylase/hydrolase family protein (.1) AT5G57540 294 / 1e-99 AtXTH13, XTH13 xyloglucan endotransglucosylase/hydrolase 13 (.1) AT4G30270 291 / 1e-98 XTH24, SEN4, BRU1, MERI-5, MERI5B SENESCENCE 4, meristem-5, MERISTEM 5, xyloglucan endotransglucosylase/hydrolase 24 (.1) AT2G18800 291 / 3e-98 ATXTH21, XTH21, XTR17 xyloglucan endotransglucosylase/hydrolase 21 (.1) AT4G14130 289 / 1e-97 XTR7, XTH15 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012978 [exp] 493 / 4e-178 AT4G28850 359 / 3e-125 xyloglucan endotransglucosylase/hydrolase 26 (.1) Lus10043232 [exp] 459 / 2e-164 AT4G28850 241 / 3e-78 xyloglucan endotransglucosylase/hydrolase 26 (.1) Lus10010938 [exp] 310 / 4e-106 AT4G14130 386 / 3e-136 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Lus10031392 [exp] 310 / 6e-106 AT3G23730 384 / 3e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010939 [exp] 309 / 2e-105 AT3G23730 384 / 2e-135 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10031393 [exp] 307 / 7e-105 AT3G23730 388 / 8e-137 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10007349 [exp] 299 / 2e-101 AT3G23730 394 / 4e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10020772 [exp] 293 / 3e-99 AT3G23730 393 / 7e-139 xyloglucan endotransglucosylase/hydrolase 16 (.1) Lus10010936 [exp] 293 / 3e-99 AT3G23730 382 / 2e-134 xyloglucan endotransglucosylase/hydrolase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G160700 [exp] 492 / 9e-178 AT4G28850 390 / 9e-138 xyloglucan endotransglucosylase/hydrolase 26 (.1) Potri.018G084300 [exp] 489 / 1e-176 AT4G28850 403 / 1e-142 xyloglucan endotransglucosylase/hydrolase 26 (.1) Potri.018G095100 [exp] 315 / 4e-108 AT4G25810 420 / 1e-149 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.018G095200 [exp] 312 / 7e-107 AT4G25810 414 / 3e-147 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.005G201200 [exp] 312 / 7e-107 AT4G14130 405 / 2e-143 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.006G170100 [exp] 311 / 2e-106 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G169900 [exp] 311 / 2e-106 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.006G170001 [exp] 311 / 2e-106 AT4G25810 380 / 1e-133 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1) Potri.002G060500 [exp] 311 / 2e-106 AT4G14130 424 / 3e-151 xyloglucan endotransglycosylase 7, xyloglucan endotransglucosylase/hydrolase 15 (.1) Potri.018G094900 [exp] 310 / 5e-106 AT4G25810 410 / 8e-146 xyloglucan endotransglucosylase/hydrolase 23, xyloglucan endotransglycosylase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0004 [flax] [poplar] Concanavalin PF00722 [flax] [poplar] Glyco_hydro_16 Glycosyl hydrolases family 16 CL0004 [flax] [poplar] Concanavalin PF06955 [flax] [poplar] XET_C Xyloglucan endo-transglycosylase (XET) C-terminus
Representative CDS sequence Show only first row Show all	>Lus10011112 pacid=23167572 polypeptide=Lus10011112 locus=Lus10011112.g ID=Lus10011112.BGIv1.0 annot-version=v1.0 ATGGCAACTCTTGGTTACTCCTCCTCCACTGTGTTTGTTGTATTGGCATTGACTGCATTTTCAATAATAGCATTCCATCCCACCTCCGTGGATGCTAAGT TCTCCAAAAGTGTCTACTTCTACTGGGGTGCTCACCACTCTTCTATCCTTGGCAATGGGGATGACCTCCAGCTTGTGTTGGATCAATCCTCTGGGTCCGG GATCAAGTCCAAGCGGCCGTTCTTGTTTGGCACCATTGAGATGCTAATCAAGTTGGTCCCTGGCAACTCTGCAGGAACAGTCACTGCATATTATATATCG TCTACTGGAGACAGGCACGATGAGATCGACTTCGAGTTCTTAGGAAATGTGTCGGGGCAACCGTACATCATCCACACAAACATCTACACCCAAGGTAATG GAAGCAGGGAGCAGCAGTTCTATCCTTGGTTTGACCCAACTGCTGATTTCCACAACTACACCATTCACTGGAATCCTACTTCCATTGTATGGTATGTGGA TAGCGTGCCAATCAGAGTGTACCGCAACTACGAGAGCAAAGGGGTACCATACCCAAATAAACAAGGGATGAGGGTCTACTCTAGCCTCTGGAACGCAGAT AACTGGGCTACTAGAGGAGGGTTGGATAAGATCGACTGGAAGTCCGCTCCTTTCATAGCGAGATACCGCAATTTCAGGGCGAGGGCTTGCAAGTATGATG GACCTGCAAGCATCAACCAATGTGCTGCAACTACTCCAGCAAACTGGTGGACATCTGCTACTCACAAACAGCTGAGCTTTTCCAAACAAGGACAGATGAA ATGGGTGAGGGACAAGTACATGATCTATGACTACTGCAGAGATTTCAAGAGGTTCAATGGCAATATCCCAGCTGAATGCTTCAACCCACAATTCTAA
AA sequence Show only first row Show all	>Lus10011112 pacid=23167572 polypeptide=Lus10011112 locus=Lus10011112.g ID=Lus10011112.BGIv1.0 annot-version=v1.0 MATLGYSSSTVFVVLALTAFSIIAFHPTSVDAKFSKSVYFYWGAHHSSILGNGDDLQLVLDQSSGSGIKSKRPFLFGTIEMLIKLVPGNSAGTVTAYYIS STGDRHDEIDFEFLGNVSGQPYIIHTNIYTQGNGSREQQFYPWFDPTADFHNYTIHWNPTSIVWYVDSVPIRVYRNYESKGVPYPNKQGMRVYSSLWNAD NWATRGGLDKIDWKSAPFIARYRNFRARACKYDGPASINQCAATTPANWWTSATHKQLSFSKQGQMKWVRDKYMIYDYCRDFKRFNGNIPAECFNPQF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10011112 [exp]	0	1
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10043232 [exp]	1.4	0.9074
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Lus10025762 [exp]	2.4	0.8527
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10040948 [exp]	3.2	0.9082
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10039171 [exp]	4.5	0.8288
					Lus10000377 [exp]	5.3	0.8490
AT4G02270		RHS13	root hair specific 13 (.1)		Lus10041926 [exp]	5.7	0.8839
AT5G05500		MOP10	Pollen Ole e 1 allergen and ex...		Lus10009837 [exp]	6.9	0.8779
AT3G10710		RHS12	root hair specific 12 (.1)		Lus10033399 [exp]	8.9	0.8635
AT5G22410		RHS18	root hair specific 18 (.1)		Lus10004859 [exp]	11.3	0.8416
AT1G12560		ATHEXPALPHA1.26...	expansin A7 (.1)		Lus10024478 [exp]	11.5	0.8258

Compare expression of checked genes

Lus10011112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.