Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28880 584 / 0 CKL3 casein kinase I-like 3 (.1) AT4G28860 579 / 0 CKL4 casein kinase I-like 4 (.1.2) AT4G26100 488 / 4e-171 CKL1, CK1 casein kinase 1 (.1) AT5G57015 483 / 4e-169 CKL12 casein kinase I-like 12 (.1) AT1G72710 483 / 6e-169 CKL2 casein kinase 1-like protein 2 (.1) AT2G19470 480 / 3e-168 CKL5 casein kinase I-like 5 (.1) AT4G28540 482 / 4e-168 CKL6, PAPK1 casein kinase I-like 6 (.1) AT1G03930 481 / 5e-168 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT5G44100 481 / 1e-167 CKL7 casein kinase I-like 7 (.1) AT3G23340 478 / 5e-167 CKL10 casein kinase I-like 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043233 [exp] 825 / 0 AT4G28880 614 / 0.0 casein kinase I-like 3 (.1) Lus10037621 [exp] 496 / 2e-174 AT1G72710 655 / 0.0 casein kinase 1-like protein 2 (.1) Lus10006879 [exp] 494 / 1e-173 AT1G72710 664 / 0.0 casein kinase 1-like protein 2 (.1) Lus10006018 [exp] 491 / 3e-172 AT1G72710 649 / 0.0 casein kinase 1-like protein 2 (.1) Lus10027628 [exp] 491 / 7e-172 AT4G26100 702 / 0.0 casein kinase 1 (.1) Lus10042570 [exp] 486 / 5e-170 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10022029 [exp] 484 / 2e-169 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10021175 [exp] 484 / 4e-169 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10014661 [exp] 481 / 6e-168 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G084500 [exp] 691 / 0 AT4G28880 632 / 0.0 casein kinase I-like 3 (.1) Potri.006G239900 [exp] 588 / 0 AT4G28880 594 / 0.0 casein kinase I-like 3 (.1) Potri.018G041000 [exp] 577 / 0 AT4G28880 589 / 0.0 casein kinase I-like 3 (.1) Potri.001G197600 [exp] 495 / 2e-173 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 495 / 2e-173 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 495 / 3e-173 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.005G226900 [exp] 492 / 1e-172 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.003G043500 [exp] 492 / 3e-172 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.002G036000 [exp] 490 / 8e-172 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.010G070400 [exp] 485 / 1e-169 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10011113 pacid=23167503 polypeptide=Lus10011113 locus=Lus10011113.g ID=Lus10011113.BGIv1.0 annot-version=v1.0 ATGGAAAGGATCGTCGGTGGAAAGTTCAAGCTCGGTCGCAAGATCGGCAGCGGATCATTTGGCGAAATATTCCTCGCTACTAATATAGATACGTATGAGA TCGTAGCTGTGAAGATCGAGAACAGTAAAACGAAGCACCCGCAGTTGCTTTACGAGGCCAAGCTTTACAATATTCTTCAAGGAGGAAGTGGCATTCCGAG CACAAAGTGGTCGGGTTTAGATAAGGAGGATCACGTGCTAGTTCTTGATTTGCTTGGGCCAAGTTTGGAGGACCTGTTTGTCTACTGTGGGCGGAAGTTC TCGCTCAAGACTGTGTTAATGTTGGCTGAGCAAATGATTACAAGGATTGAATATGTGCATTCAAAAGGTTATCTGCACAGAGACATTAAACCTGATAACT TCCTCATGGGTCTTGGTCGGAAAGCAAACCAGGTATACATAATTGATTTTGGGCTTGCAAAAAGATATAGAGATGCCACAACGAATCGACACATTCCTTA CAGAGAGAACAAGAACTTGACTGGAACTGCACGCTACGCAAGTTGCAATACTCATCTCGGCATTGAGCAGAGTCGACGTGATGATTTAGAGTCACTTGGC TACGTGCTACTATATTTTCTGAGGGGGAGCCTTCCATGGCAGGGTTTAAAAGCAGCTACGAAGAAGCAGAAGTATGATAAAATATGTGAAAAGAAAGTTT CTACTCCAATTGAGGTTCTATGCAAATCTCATCCAGTGGAGTTTGCTTCCTACATGCATTATTGTCATTCACTGACGTTTGATCAACGACCCGACTATGG GTTTTTGAAGCGGCTGTTTCGAGATCTGTTTGTACGTGAAGGTATGTATGTGCTGATGAGTTCTAGTTTCTACTTCAAAACTGAATATTTAGTTTCCATA TTGTGGTCAAAGTGTCCCCTCTTATCTTCTATTGATGCAGGATATGAGTTCGATTATGTATTTGATTGGACCATTCTAAAGTACCAGCAGGCACAGAAGC CTAGAACTCAACCTCGATTATCGCAGCAGCAAGTTACTGGAACAAGTGGCAGCCATGTTGTTCGAACAGAGAATGCAAATCAACAAGGAAGTAGCAACGC TGCTTATGCCTCTGAGGTTGTCCAATCTACTGGTTCTGGACTCCATATGCAATTCAAATCATCAACTGGAAAGAATTTGGTATCCGACAATCATGCTGAC AGGAATGTTATGGGTGACCCTCATATGCCTTCCAGTTCCTATTCATATGCTGGGGCATCAAGAAGAACTGCTGTGAAACCAGGTGGCTTACCCACTGAAG CACCGAGTGGTCAGGGACACACTAGTAAGGTTGGGGCATCTGGGAGCTGGATCTCGTCATTGCAACGTGTTCATTCTGCCAAATGA
AA sequence Show only first row Show all	>Lus10011113 pacid=23167503 polypeptide=Lus10011113 locus=Lus10011113.g ID=Lus10011113.BGIv1.0 annot-version=v1.0 MERIVGGKFKLGRKIGSGSFGEIFLATNIDTYEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPSTKWSGLDKEDHVLVLDLLGPSLEDLFVYCGRKF SLKTVLMLAEQMITRIEYVHSKGYLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDATTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLG YVLLYFLRGSLPWQGLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYMHYCHSLTFDQRPDYGFLKRLFRDLFVREGMYVLMSSSFYFKTEYLVSI LWSKCPLLSSIDAGYEFDYVFDWTILKYQQAQKPRTQPRLSQQQVTGTSGSHVVRTENANQQGSSNAAYASEVVQSTGSGLHMQFKSSTGKNLVSDNHAD RNVMGDPHMPSSSYSYAGASRRTAVKPGGLPTEAPSGQGHTSKVGASGSWISSLQRVHSAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	0	1
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10043233 [exp]	1.0	0.9454
AT2G27285			Coiled-coil domain-containing ...		Lus10039072 [exp]	5.2	0.8575
AT5G53330			Ubiquitin-associated/translati...		Lus10014944 [exp]	5.5	0.8753
AT2G02960			RING/FYVE/PHD zinc finger supe...		Lus10037172 [exp]	5.8	0.8910
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	6.0	0.8495
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10028820 [exp]	6.3	0.8526
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10033818 [exp]	7.2	0.8699
AT1G20110			RING/FYVE/PHD zinc finger supe...		Lus10013571 [exp]	8.1	0.8637
AT4G30960		CIPK6, SIP3, Sn...	SNF1-RELATED PROTEIN KINASE 3....		Lus10036280 [exp]	10.2	0.8669
AT3G54300		ATVAMP727	vesicle-associated membrane pr...		Lus10043431 [exp]	10.4	0.8212

Compare expression of checked genes

Lus10011113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.