Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67280 540 / 0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) AT1G11840 446 / 1e-157 ATGLX1 glyoxalase I homolog (.1.2.3.4.5.6) AT1G08110 74 / 3e-15 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043235 [exp] 706 / 0 AT1G67280 551 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10038612 [exp] 445 / 9e-157 AT1G67280 455 / 4e-161 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10003523 [exp] 445 / 1e-153 AT1G11840 495 / 5e-174 glyoxalase I homolog (.1.2.3.4.5.6) Lus10002943 [exp] 402 / 5e-141 AT1G11840 447 / 5e-160 glyoxalase I homolog (.1.2.3.4.5.6) Lus10000007 [exp] 126 / 8e-36 AT1G11840 131 / 1e-39 glyoxalase I homolog (.1.2.3.4.5.6) Lus10021429 [exp] 77 / 2e-16 AT1G08110 297 / 3e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Lus10016138 [exp] 78 / 4e-16 AT1G08110 302 / 2e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G084800 [exp] 577 / 0 AT1G67280 553 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.006G160600 [exp] 571 / 0 AT1G67280 571 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.018G042100 [exp] 499 / 3e-178 AT1G67280 488 / 3e-174 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.004G013200 [exp] 441 / 2e-156 AT1G11840 496 / 8e-179 glyoxalase I homolog (.1.2.3.4.5.6) Potri.009G007200 [exp] 80 / 3e-17 AT1G08110 318 / 6e-111 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Potri.006G239802 [exp] 92 / 2e-10 AT1G67280 90 / 7e-13 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF00903 [flax] [poplar] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10011115 pacid=23167550 polypeptide=Lus10011115 locus=Lus10011115.g ID=Lus10011115.BGIv1.0 annot-version=v1.0 ATGGCGTCCTCAGTCCGTCCGTCTCTCTCGTCCTCTTTCAGGCTCTGTAGCAATACCGCCACTTCTCGCGCTGCCGTCGCTTCTCTCACTTCCTTCGCTT CTCTTCCTTCCCACCGATTGCCTTTCCTCTCCACCGCTGTTCGACATTCGGAGCTACTTGGGTTCAAACCATCTAAACCATGTGGACAAGAGAGTGCCAG CTTCAGAGTTTGTGCAGCTGGGAATATGGCGCAAGCAAGCACAACAGCTGCCCAAGAAAATATACTTGAGTGGGTCAAACAGGACAACAGAAGAATGCTA CATGTTGTGTATCGTGTTGGGGATTTGGACAGGACCATAAAATTCTACACAGAGTGTTTGGGTATGAAGCTGCTAAGGAAACGAGACATTCCAGAGGAGA GGTACACAAATGCCTTTCTTGGATATGGACCAGAAGATTCTAACTTTGTCATAGAGATTACATACAATTACGGTGTTGACACGTATGACATTGGGAGTGG ATTTGGACATTTCGGCATTGCAGTAGAGGATGTTTCCAAGACTGTTGAACTTGTAAAGGCCAAGGGAGGCAAAGTAACAAGGGAACCTGGTCCTGTTAAA GGTGGTAGCACGGTGATTGCGTTTATTGAAGACCCTGATGGCTATAAGTTTGAACTTCTTGAAAGAGGGCCTACTCCAGAGCCTCTTTGTCAGGTGATGC TTCGTGTTGGTGATCTTGATCGGGCAATAAAGTTCTATGAGAAGGTTAGATCAGTAGCTAGACCACTCCTTTCTGCTTTTGGCATGGAGCTTCTCCGCAA ACGTGATAATTCAGAATACAAGTATACTATTGCAATGATGGGCTATGGACCTGAAGATAAAAATGCTGTACTAGAGTTAACGTACAATTATGGAGTCACT GAATATGAGAAGGGAAATGCTTATGCTCAGATAGCAATAGGCACAGATGATGTTTACAAAACAGCAGAAGCTGTCAAACTCTTTGGTGGGAAGATAACTC GGGAACCAGGGCCATTGCCGGGTATCAATACCAAGATCACTGCATGCTTGGATCCAGATGGTTGGAAGACGGTGTTCGTGGATAATATTGATTTCCTGAA GGAATTGGAGTGA
AA sequence Show only first row Show all	>Lus10011115 pacid=23167550 polypeptide=Lus10011115 locus=Lus10011115.g ID=Lus10011115.BGIv1.0 annot-version=v1.0 MASSVRPSLSSSFRLCSNTATSRAAVASLTSFASLPSHRLPFLSTAVRHSELLGFKPSKPCGQESASFRVCAAGNMAQASTTAAQENILEWVKQDNRRML HVVYRVGDLDRTIKFYTECLGMKLLRKRDIPEERYTNAFLGYGPEDSNFVIEITYNYGVDTYDIGSGFGHFGIAVEDVSKTVELVKAKGGKVTREPGPVK GGSTVIAFIEDPDGYKFELLERGPTPEPLCQVMLRVGDLDRAIKFYEKVRSVARPLLSAFGMELLRKRDNSEYKYTIAMMGYGPEDKNAVLELTYNYGVT EYEKGNAYAQIAIGTDDVYKTAEAVKLFGGKITREPGPLPGINTKITACLDPDGWKTVFVDNIDFLKELE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10011115 [exp]	0	1
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10043235 [exp]	1.0	0.9598
AT3G10350			P-loop containing nucleoside t...		Lus10038715 [exp]	1.7	0.8717
AT5G61040			unknown protein		Lus10021155 [exp]	4.0	0.8726
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10034273 [exp]	5.7	0.8697
AT1G06110		SKIP16	SKP1/ASK-interacting protein 1...		Lus10027693 [exp]	6.3	0.8602
AT4G17740			Peptidase S41 family protein (...		Lus10004402 [exp]	6.9	0.8484
AT1G21760		ATFBP7	F-box protein 7 (.1)		Lus10029676 [exp]	6.9	0.8383
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Lus10043453 [exp]	7.7	0.8310
AT1G70100			unknown protein		Lus10010725 [exp]	7.9	0.8379
AT3G10350			P-loop containing nucleoside t...		Lus10037982 [exp]	9.8	0.8266

Compare expression of checked genes

Lus10011115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.