Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28910 237 / 5e-73 NINJA novel interactor of JAZ (.1.2.3) AT3G29575 70 / 3e-13 AFP3 ABI five binding protein 3 (.1.3.4) AT3G07250 71 / 2e-12 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT1G13740 60 / 1e-09 AFP2 ABI five binding protein 2 (.1) AT1G69260 59 / 2e-09 AFP1 ABI five binding protein (.1) AT3G02140 54 / 8e-08 AFP4, TMAC2 TWO OR MORE ABRES-CONTAINING GENE 2, ABI FIVE BINDING PROTEIN 4, AFP2 (ABI five-binding protein 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043236 [exp] 812 / 0 AT4G28910 265 / 9e-84 novel interactor of JAZ (.1.2.3) Lus10022764 [exp] 67 / 8e-12 AT3G29575 113 / 2e-29 ABI five binding protein 3 (.1.3.4) Lus10036898 [exp] 64 / 5e-11 AT1G69260 200 / 2e-62 ABI five binding protein (.1) Lus10026667 [exp] 63 / 1e-10 AT1G13740 237 / 5e-76 ABI five binding protein 2 (.1) Lus10003145 [exp] 63 / 2e-10 AT3G29575 112 / 4e-29 ABI five binding protein 3 (.1.3.4) Lus10004645 [exp] 62 / 2e-10 AT1G13740 233 / 2e-74 ABI five binding protein 2 (.1) Lus10037084 [exp] 61 / 3e-10 AT1G13740 197 / 2e-61 ABI five binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085100 [exp] 431 / 2e-147 AT4G28910 324 / 3e-106 novel interactor of JAZ (.1.2.3) Potri.006G162900 [exp] 416 / 1e-141 AT4G28910 307 / 1e-99 novel interactor of JAZ (.1.2.3) Potri.008G096500 [exp] 64 / 5e-11 AT1G13740 240 / 6e-77 ABI five binding protein 2 (.1) Potri.010G157900 [exp] 62 / 4e-10 AT1G13740 229 / 1e-72 ABI five binding protein 2 (.1) Potri.004G120600 [exp] 61 / 5e-10 AT1G13740 176 / 5e-52 ABI five binding protein 2 (.1) Potri.017G094500 [exp] 61 / 6e-10 AT1G13740 169 / 1e-49 ABI five binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07897 [flax] [poplar] EAR Ethylene-responsive binding factor-associated repression
Representative CDS sequence Show only first row Show all	>Lus10011116 pacid=23167562 polypeptide=Lus10011116 locus=Lus10011116.g ID=Lus10011116.BGIv1.0 annot-version=v1.0 ATGGAGGATGAGAATGGTCTTGAACTTAGTTTAGGTCTAGGTTTTGGTGGATCATCCACCAAATGCAAGGGAAAAATTGGAAGCTCATTGGATATTGGGT CAGAAGTTGAGAAAGCAGACAAACCGAAAGAAGATTTGAAAGTTCTTCTTGGTGCCAGCCCTCTGAATCAAGATCCAGGCAGTGGATCTCATTCTCACAG GGGTGATTCGTCGAAACCACAAGAGAACTTCCACGACCTCACAAGTAGAAATGCTGATCGTGATGCATCATCCATAAGTCTGAATGCTAGAGGTCTCTGG GTTGGATCTAGTAACAGATCTGTGGGAACTGAAGATGAGAAGAGGACCGATGGAGGAGGAGGTAACAAACGCAAAGTAGATTTTGATGATGTAAACACTC AGAAGAGGCCGGAAAGGGACGGTGATCACCGGGTTGATTTCCACGACAAGAAAGCATCACATATTTCCCTAACTGAAGATGGCTCCACTGCTGAAAATGA AGATGTAGCGGAGTCGGAAGTGGAGGGTTCAACCACAAGGTTCGTTTCTCGGCATGATGCAAATGCTGGGGAGTTGCAAGATCAAAGAAGGCATAATGGT TTGCCAGAAAATGAATTTAAGCATGGCATCAAATTTGGGACGCTGTTCTCAGTCGAACCATCGAATGTCATGAGCATGTCTTACCAGTTCCCAGTGAAAG ATCACCATCCAGTTGGTTCAGCTACCACGACGGGCATAGTTTCAACTTCAAACACTATCCAGACAGTAAATCCAGGTGGTTCGCCGATAACGTTTGGTTA CTCTCCTGTGCAGCTTCCAACCCTGGATAAAAATAATTCTTGGGGTCTTGTTTCTCAGCAGCAACAATTCCAGCCTCCGTATAAAGTCAAACCGCCTGCA AACTCAGATAAGCACAATGAACGACTAACAATTTCTCAAGCCATGCAAATAATTGGTCGAAACCCCACCGAGGTTGCACAATACGATTCTCGAGTATTTG ATCGGCCGAAAGGTGATGGTAAACAACAAACCGGAGAACAAGGTTCCTCTTCCAAGGCCGAAAACGAAACAAAGATTAGCGGCGCAAACGTAAGAGTGCA TGATGGCCACGATCAACTAGCAGCTGATGGCTTCTCTCTCGACTTCTCCGCGATAAAGCCAGGCATTTCTCCAGATGTTAAGCTCGGAGGTTGCGGTTCA TACCCGAACCTACCTTGGGTTTCCACCACAGCTCCCGGACCAAACGGTAGAACCATTTCGGGGGTCACATACAGATACAGCCCGAGCCAAATAAGAATCG TTTGCGCTTGCCACGGTTCGCATATGTCCCCGGAGGAATTCATTCTCCATGCAAGTGATGGTAATGCCGCTGCTACCGGGGAGGGTAACGGTGGGGCAGC ATCGGCTCAACGTAACAGTAACCCACCTGCATCTGCTCGTAGCTGA
AA sequence Show only first row Show all	>Lus10011116 pacid=23167562 polypeptide=Lus10011116 locus=Lus10011116.g ID=Lus10011116.BGIv1.0 annot-version=v1.0 MEDENGLELSLGLGFGGSSTKCKGKIGSSLDIGSEVEKADKPKEDLKVLLGASPLNQDPGSGSHSHRGDSSKPQENFHDLTSRNADRDASSISLNARGLW VGSSNRSVGTEDEKRTDGGGGNKRKVDFDDVNTQKRPERDGDHRVDFHDKKASHISLTEDGSTAENEDVAESEVEGSTTRFVSRHDANAGELQDQRRHNG LPENEFKHGIKFGTLFSVEPSNVMSMSYQFPVKDHHPVGSATTTGIVSTSNTIQTVNPGGSPITFGYSPVQLPTLDKNNSWGLVSQQQQFQPPYKVKPPA NSDKHNERLTISQAMQIIGRNPTEVAQYDSRVFDRPKGDGKQQTGEQGSSSKAENETKISGANVRVHDGHDQLAADGFSLDFSAIKPGISPDVKLGGCGS YPNLPWVSTTAPGPNGRTISGVTYRYSPSQIRIVCACHGSHMSPEEFILHASDGNAAATGEGNGGAASAQRNSNPPASARS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Lus10011116 [exp]	0	1
AT2G44200			CBF1-interacting co-repressor ...		Lus10038730 [exp]	2.4	0.8070
AT3G26560			ATP-dependent RNA helicase, pu...		Lus10036783 [exp]	4.2	0.7581
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10012835 [exp]	5.2	0.7768
AT5G55600			agenet domain-containing prote...		Lus10016606 [exp]	8.9	0.7860
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10034612 [exp]	12.0	0.7585
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10030485 [exp]	13.2	0.7543
AT5G47940			unknown protein		Lus10019713 [exp]	13.7	0.7001
AT2G42620		PPS, PP2, ORE9,...	PLEIOTROPIC PHOTOSIGNALING, OR...		Lus10029834 [exp]	16.0	0.7054
AT5G35330		MBD2, MBD02, AT...	METHYL-CPG-BINDING DOMAIN PROT...		Lus10021593 [exp]	17.7	0.7200
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	18.2	0.7678

Compare expression of checked genes

Lus10011116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.