Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50720 115 / 6e-33 Stigma-specific Stig1 family protein (.1) AT4G26880 113 / 4e-32 Stigma-specific Stig1 family protein (.1) AT5G55110 107 / 7e-30 Stigma-specific Stig1 family protein (.1) AT1G11925 71 / 1e-15 Stigma-specific Stig1 family protein (.1) AT1G53130 65 / 2e-13 GRI GRIM REAPER, Stigma-specific Stig1 family protein (.1) AT1G50650 61 / 1e-11 Stigma-specific Stig1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011146 [exp] 261 / 4e-90 AT1G50720 125 / 2e-37 Stigma-specific Stig1 family protein (.1) Lus10043047 [exp] 253 / 7e-87 AT1G50720 133 / 3e-40 Stigma-specific Stig1 family protein (.1) Lus10041930 [exp] 73 / 1e-16 AT1G53130 152 / 1e-47 GRIM REAPER, Stigma-specific Stig1 family protein (.1) Lus10005544 [exp] 70 / 8e-16 AT1G53130 125 / 6e-38 GRIM REAPER, Stigma-specific Stig1 family protein (.1) Lus10020831 [exp] 64 / 5e-13 AT1G11925 100 / 7e-28 Stigma-specific Stig1 family protein (.1) Lus10012679 [exp] 62 / 2e-12 AT1G11925 104 / 3e-29 Stigma-specific Stig1 family protein (.1) Lus10006512 [exp] 56 / 3e-10 AT1G50650 71 / 5e-16 Stigma-specific Stig1 family protein (.1) Lus10000696 [exp] 56 / 8e-10 AT1G50650 100 / 3e-26 Stigma-specific Stig1 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G356600 [exp] 144 / 2e-44 AT1G50720 133 / 2e-40 Stigma-specific Stig1 family protein (.1) Potri.011G080800 [exp] 138 / 8e-42 AT1G50720 130 / 3e-39 Stigma-specific Stig1 family protein (.1) Potri.004G030900 [exp] 87 / 9e-22 AT1G11925 101 / 4e-28 Stigma-specific Stig1 family protein (.1) Potri.004G006800 [exp] 81 / 8e-20 AT1G11925 80 / 1e-19 Stigma-specific Stig1 family protein (.1) Potri.004G006900 [exp] 80 / 2e-19 AT1G11925 108 / 4e-31 Stigma-specific Stig1 family protein (.1) Potri.011G008932 [exp] 77 / 6e-18 AT1G11925 91 / 4e-24 Stigma-specific Stig1 family protein (.1) Potri.010G228100 [exp] 71 / 1e-15 AT1G11925 94 / 2e-25 Stigma-specific Stig1 family protein (.1) Potri.004G007100 [exp] 70 / 3e-15 AT1G11925 98 / 1e-26 Stigma-specific Stig1 family protein (.1) Potri.004G007200 [exp] 71 / 4e-15 AT1G11925 98 / 5e-26 Stigma-specific Stig1 family protein (.1) Potri.004G007000 [exp] 67 / 2e-14 AT1G11925 96 / 5e-26 Stigma-specific Stig1 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04885 [flax] [poplar] Stig1 Stigma-specific protein, Stig1
Representative CDS sequence Show only first row Show all	>Lus10011117 pacid=23167531 polypeptide=Lus10011117 locus=Lus10011117.g ID=Lus10011117.BGIv1.0 annot-version=v1.0 ATGACCACCACTGCGGTCCTCGTCAAGACGATGCTCCTCATATTCGTAGCCACCGCCATCTCCGTCGCCCTCACCGAGCAAACCATCAACCCTCCTCAAC AAGAACCCACTAGGCCGGTTAGCCGATTCCTCAAGCAAGAAGGCACTACTAGTACTAGTACCAGGGATGGCATCCCCGGGATTGGTGGAAACAATGGAAA TGGTGAAGGAGGGGGAGGGATTAAGAACCCCAAGGCGGCCGACCACTGCAACAATGACCCCGGTTTGTGTGAGGCCCTATACGGAAAGGGCTTTGCCTGT TGCAACAACAAGTGTAAGGATTTGAACTCCGACAAGCAGAACTGCGGTTCGTGCAAGACCAAGTGCGACTTCAAGGACGAGTGTTGCCGCGGGGAGTGTG TCTTCCTGTCCCTCGACAAGCGCCACTGCGGAAAGTGCAATTCCCCTTGTGCCCCCGGACAACCTTGTGTCTACGGCATGTGCAATGACCACATCGATCC ATCTTCATATCCGATCCATCTACGACTGCCGTTACATTATTATATTATTATTATATTTTAA
AA sequence Show only first row Show all	>Lus10011117 pacid=23167531 polypeptide=Lus10011117 locus=Lus10011117.g ID=Lus10011117.BGIv1.0 annot-version=v1.0 MTTTAVLVKTMLLIFVATAISVALTEQTINPPQQEPTRPVSRFLKQEGTTSTSTRDGIPGIGGNNGNGEGGGGIKNPKAADHCNNDPGLCEALYGKGFAC CNNKCKDLNSDKQNCGSCKTKCDFKDECCRGECVFLSLDKRHCGKCNSPCAPGQPCVYGMCNDHIDPSSYPIHLRLPLHYYIIIIF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50720			Stigma-specific Stig1 family p...		Lus10011117 [exp]	0	1
AT5G60520			Late embryogenesis abundant (L...		Lus10031532 [exp]	5.3	0.9502
AT1G50720			Stigma-specific Stig1 family p...		Lus10043047 [exp]	8.4	0.9407
AT5G54370			Late embryogenesis abundant (L...		Lus10026972 [exp]	11.7	0.9389
AT1G50720			Stigma-specific Stig1 family p...		Lus10011146 [exp]	12.5	0.9296
AT5G54370			Late embryogenesis abundant (L...		Lus10037886 [exp]	13.9	0.9349
AT5G60520			Late embryogenesis abundant (L...		Lus10015149 [exp]	16.7	0.9220
AT2G43870			Pectin lyase-like superfamily ...		Lus10022530 [exp]	19.4	0.9302
AT5G54370			Late embryogenesis abundant (L...		Lus10038588 [exp]	19.5	0.9195
					Lus10004308 [exp]	20.6	0.8488
AT4G15390			HXXXD-type acyl-transferase fa...		Lus10025730 [exp]	22.0	0.9175

Compare expression of checked genes

Lus10011117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.