Plant FIBer expression Database

Lus10011118 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037335
[exp]
93 / 4e-22 AT5G27260 69 / 7e-13 unknown protein
Lus10032348
[exp]
91 / 1e-21 AT5G27260 52 / 2e-07 unknown protein
Lus10035759
[exp]
91 / 2e-21 AT5G27260 74 / 6e-15 unknown protein
Lus10016300
[exp]
69 / 3e-14 ND /
Lus10020976
[exp]
66 / 1e-13 ND /
Lus10019607
[exp]
66 / 7e-13 ND /
Lus10020974
[exp]
66 / 1e-12 ND /
Lus10006010
[exp]
61 / 2e-11 ND /
Lus10012077
[exp]
60 / 1e-10 AT5G27260 50 / 5e-07 unknown protein
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10011118 pacid=23167523 polypeptide=Lus10011118 locus=Lus10011118.g ID=Lus10011118.BGIv1.0 annot-version=v1.0
ATGGAAATGGTGTGTAAAGCTAGATTTATTGATCCAAGTTTACTTGCTGGGTTTTTTTCGTGTTGCAGGTTCTCTGTTCATGCGGCTGCGTTCCTTTGTT
TTGGGTTAATGGATCAATGTCAAGAAAGCGGAAGGATGAGGAAAGTGCCGAAACAGGACAAGTTTGTTGTATTGGAAGAACAAGTCAACCCTCCAACACC
TACTGAGAAGAGCAATGAATCTGAAGCCAGTAGCCGTCCAAAGAGGGCTAGTCTGTCAACTAGAAATGAATCCGTGAGCGACGATCAATCTGAAGCCACT
AGCCGTACAAAGAGGGCTTGTCGATCAACTGGAAATGATTCCGAGAGCGACGATCAATCTGAAGCCAGTAGCCGTCCAATGAGGGCTCGTCTGTCAACTA
GAAATGACACCGAGAGCGACGACTTGGTAGCTGAGTTGAAGCCAGTGATTAAGGCAGCAGCCGATTGGCTTCGGTCAATGGTTGAGGAAACTGAAACCAT
CAAGAAGCAGAGGAAGATGTTGTACAAAGAGATTAGAAAAATCGAAGGTCTTACGACGAAGCAGGCAATGGTTGTGGCGATTGACCTTGTAAAGGACGAC
AATGTGCTGCAATTTTTCTTCAGTCTGGATTCGGATCGACGCAAGCTCCTCGCTCAAAGTATTCTTGGTACACTTTAA
AA sequence
>Lus10011118 pacid=23167523 polypeptide=Lus10011118 locus=Lus10011118.g ID=Lus10011118.BGIv1.0 annot-version=v1.0
MEMVCKARFIDPSLLAGFFSCCRFSVHAAAFLCFGLMDQCQESGRMRKVPKQDKFVVLEEQVNPPTPTEKSNESEASSRPKRASLSTRNESVSDDQSEAT
SRTKRACRSTGNDSESDDQSEASSRPMRARLSTRNDTESDDLVAELKPVIKAAADWLRSMVEETETIKKQRKMLYKEIRKIEGLTTKQAMVVAIDLVKDD
NVLQFFFSLDSDRRKLLAQSILGTL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10011118
[exp]
0 1
AT3G59110 Protein kinase superfamily pro... Lus10006544
[exp]
3.2 0.8615
AT3G25980 MAD2 MITOTIC ARREST-DEFICIENT 2, DN... Lus10006436
[exp]
3.5 0.8965
AT3G48210 unknown protein Lus10042089
[exp]
6.0 0.8531
AT3G48210 unknown protein Lus10018093
[exp]
11.5 0.8219
AT1G77580 Plant protein of unknown funct... Lus10042719
[exp]
12.4 0.8396
AT4G16720 Ribosomal protein L23/L15e fam... Lus10009653
[exp]
15.1 0.8399
AT3G62870 Ribosomal protein L7Ae/L30e/S1... Lus10010745
[exp]
15.5 0.8302
AT3G05560 Ribosomal L22e protein family ... Lus10037498
[exp]
18.0 0.8119
AT5G35520 MIS12, ATMIS12 MIS12 HOMOLOGUE, ARABIDOPSIS M... Lus10009016
[exp]
19.5 0.8279
AT4G09800 RPS18C S18 ribosomal protein (.1) Lus10006914
[exp]
23.0 0.8259

Lus10011118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.