Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20020 539 / 0 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT1G23400 378 / 3e-124 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G31010 271 / 4e-85 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) AT5G54890 254 / 4e-79 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 64 / 3e-10 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT3G18390 55 / 2e-07 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G29750 54 / 3e-07 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G23070 52 / 1e-06 ATCFM3A CRM family member 3A (.1) AT3G25440 49 / 7e-06 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT4G14510 48 / 2e-05 ATCFM3B CRM family member 3B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043237 [exp] 1039 / 0 AT2G20020 605 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10012974 [exp] 593 / 0 AT2G20020 544 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10029134 [exp] 376 / 3e-123 AT1G23400 712 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10013029 [exp] 363 / 1e-116 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10034952 [exp] 296 / 1e-94 AT2G20020 274 / 2e-85 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10041383 [exp] 285 / 5e-90 AT4G31010 526 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10040080 [exp] 258 / 7e-80 AT5G54890 484 / 2e-172 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10036545 [exp] 239 / 5e-73 AT4G31010 446 / 8e-157 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10019623 [exp] 204 / 1e-61 AT5G54890 318 / 4e-109 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G163100 [exp] 579 / 0 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G042500 [exp] 400 / 7e-133 AT1G23400 655 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.014G074400 [exp] 284 / 6e-90 AT4G31010 501 / 1e-177 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Potri.001G423800 [exp] 260 / 2e-81 AT5G54890 514 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.001G350801 [exp] 71 / 2e-12 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.012G056100 [exp] 63 / 6e-10 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 59 / 1e-08 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.014G176900 [exp] 49 / 9e-06 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.017G116700 [exp] 47 / 5e-05 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.013G083000 [exp] 46 / 5e-05 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10011119 pacid=23167571 polypeptide=Lus10011119 locus=Lus10011119.g ID=Lus10011119.BGIv1.0 annot-version=v1.0 ATGGCATTGAAGCTGCTCCAAATCCCATTTCCGATTACTGCTCCGCCGCCGGCAAGCTCGTCTTCGACTACCAACCCGTCACCATCGGAGCCTCATCTCC GCCATTATACCACTGTGACGCGCTTCTCCCGTTGGAACAATGTCAACGCCAGACAATTGAAGGACAGGAAGGAAATCGAGGATGACAGCCGCCGCGCTCA CCGATTCGGTTCCGTCGATGCTAAAGATCCGACGGCAACATCCCGTGGCGGCAGGAGGAGTTTCAAGTCAGTATGGACGCCGTCTTCGCCACCCGGCCGG GGATCCCAATATTTGAAACCCACCGAAGGCGGGCAGAAACCCGCTCACCCGGCCTTCCGTAAGGTCATCAAACGGGAGCAACCTAATAATCGGAAAGCTG ACGTCAAACTCAGCGAAGATGGGCTCTCTTACGTCATCAACGGGGCGCCGTTCGAGTTCAAGTACAGCTACACGGAGGCGCCCAAAGTTAAGCCGCTGAA GTTAAGGGAGCCGCCTTTCTCGCCGTTTGGTCCCGTGACGACGCCTCGGCCGTGGACCGGAAGAGCCCCGCTTCCGCCTAGTAAGAAGAAGTTGAAGGAA TTCGATTCGTTTCAGCCACCGCCACCGAATAAGAAAGGTGTCAAACCCGTCCAACCGCCGGGCCCTTTTCTGCCTGGAACGGGGCCGAGGTACGTGAATA CAAGAGAGGAGATACTGGGAGAGCCATTGACAAAGGAGGAGATTAAGTCTTTACTCGAAGGCTGCGTCAAGTCCAGGCGGCAAATGAATATGGGCAGAGA TGGTTTGACTCACAACATGCTTGATAACATACATGCTCATTGGAAGCGGAAGAGGGTCTGCAAGATAAAATGCATGGGAGTTTGCACTGTCGATTTGGAC AATGTCTGCGAAGAACTCGAGCAAAGGACTGGAGGGAAGATCATTTACAAGAGAGGAGGAATGGTGTATCTATTCCGAGGGAGAAACTATAATTACAGAA CTCGAATCCGGCTCCCTCTCATGTTATGGAAACCAGCTCCTGCAGTCTATCCAAGGTTGGTCCAAAAAGCTCCAGCTGGTCTGACATTGGATGAAGCCTC TGAGATGCGGAAGAAGGGTCGAAGTTTGATTCCCATATGCAAACTTGGGAAAAATGGTGTGTACTCTTATCTGACTGATAATGTCAGAGAAGCATTTGAA GAGTGTGAATTGGTCAGAATCAATTGTCAGGGGATGAATGGAAGTGATTTCCGGAGAATCGGTGCCAAGTTAAGGGACCTTGTTCCATGCGTTCTAATCT CTTTTGAGGCTGAACACATTCTTATGTGGAGAGGAAGGGACTGGAAGTCCTCCCCAACAAGATCGATGCCCATTGATGGCCAAAATGAAGAAACTATGAT TAGTCTAGATACGAACGAGAGCGCGTTCGTTGAGGATACCCACAATAGGAATGAAGTAGCAGCAGCAAGAATAGATGGTTGTCATAATGCAGTAGAAAGC TCTGAACAAAGCTGGAAAAGTTTGCCATCTATGCAGGGAGTGATAGGCATGTTGAACAAAGCTGTTGAAAATGGGGCTGCATTACTGTTAGATGATGAGG AATTAGATGCTGACACTATCCGTAAGAGGACAGTTATCTTCTCCCAGTCAGCTACACCGTGTCCTGTATTCCAGTATCGGAGGCAAAGAAGGAAAGACGA ACTGGAGCGAAACTGTTCGAATCAGGAAAGTGGAGATTCGGAGTATGAAGAAGTCCCAGCAACGGCAGTAAGAGTAGAAGGGTTAGAATTAGCGGGTGAA ACTCTTGAGGGAAGGTTGGGCGTAGATGAACTTGCTAAGCTGCTACGATAG
AA sequence Show only first row Show all	>Lus10011119 pacid=23167571 polypeptide=Lus10011119 locus=Lus10011119.g ID=Lus10011119.BGIv1.0 annot-version=v1.0 MALKLLQIPFPITAPPPASSSSTTNPSPSEPHLRHYTTVTRFSRWNNVNARQLKDRKEIEDDSRRAHRFGSVDAKDPTATSRGGRRSFKSVWTPSSPPGR GSQYLKPTEGGQKPAHPAFRKVIKREQPNNRKADVKLSEDGLSYVINGAPFEFKYSYTEAPKVKPLKLREPPFSPFGPVTTPRPWTGRAPLPPSKKKLKE FDSFQPPPPNKKGVKPVQPPGPFLPGTGPRYVNTREEILGEPLTKEEIKSLLEGCVKSRRQMNMGRDGLTHNMLDNIHAHWKRKRVCKIKCMGVCTVDLD NVCEELEQRTGGKIIYKRGGMVYLFRGRNYNYRTRIRLPLMLWKPAPAVYPRLVQKAPAGLTLDEASEMRKKGRSLIPICKLGKNGVYSYLTDNVREAFE ECELVRINCQGMNGSDFRRIGAKLRDLVPCVLISFEAEHILMWRGRDWKSSPTRSMPIDGQNEETMISLDTNESAFVEDTHNRNEVAAARIDGCHNAVES SEQSWKSLPSMQGVIGMLNKAVENGAALLLDDEELDADTIRKRTVIFSQSATPCPVFQYRRQRRKDELERNCSNQESGDSEYEEVPATAVRVEGLELAGE TLEGRLGVDELAKLLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10011119 [exp]	0	1
AT5G05830			RING/FYVE/PHD zinc finger supe...		Lus10028249 [exp]	1.7	0.8418
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10016667 [exp]	5.9	0.8318
AT4G34290			SWIB/MDM2 domain superfamily p...		Lus10002106 [exp]	8.5	0.8503
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10020018 [exp]	8.9	0.8377
AT2G37390		NAKR2	SODIUM POTASSIUM ROOT DEFECTIV...		Lus10025294 [exp]	11.0	0.8214
					Lus10016908 [exp]	15.7	0.8053
AT3G19800			Protein of unknown function (D...		Lus10040969 [exp]	16.0	0.8449
AT5G39980			Tetratricopeptide repeat (TPR)...		Lus10041429 [exp]	16.2	0.8351
AT4G21065			Tetratricopeptide repeat (TPR)...		Lus10013319 [exp]	18.5	0.8040
AT5G10310			unknown protein		Lus10025740 [exp]	19.0	0.8053

Compare expression of checked genes

Lus10011119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.