Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32790 501 / 1e-172 Exostosin family protein (.1) AT5G37000 487 / 7e-168 Exostosin family protein (.1) AT5G19670 484 / 9e-166 Exostosin family protein (.1) AT5G25820 459 / 1e-155 Exostosin family protein (.1) AT5G11610 439 / 4e-149 Exostosin family protein (.1.2) AT4G16745 417 / 2e-140 Exostosin family protein (.1.2) AT5G03795 306 / 5e-98 Exostosin family protein (.1) AT3G07620 292 / 4e-93 Exostosin family protein (.1) AT5G25310 283 / 2e-89 Exostosin family protein (.1) AT5G11130 276 / 7e-87 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043238 [exp] 974 / 0 AT4G32790 493 / 7e-170 Exostosin family protein (.1) Lus10000608 [exp] 494 / 2e-169 AT4G32790 630 / 0.0 Exostosin family protein (.1) Lus10034951 [exp] 489 / 6e-167 AT5G19670 701 / 0.0 Exostosin family protein (.1) Lus10002799 [exp] 488 / 6e-167 AT5G25820 627 / 0.0 Exostosin family protein (.1) Lus10012973 [exp] 488 / 1e-166 AT5G19670 716 / 0.0 Exostosin family protein (.1) Lus10043239 [exp] 484 / 7e-166 AT5G19670 748 / 0.0 Exostosin family protein (.1) Lus10011121 [exp] 473 / 7e-164 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10023927 [exp] 461 / 9e-158 AT5G25820 561 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 310 / 1e-99 AT5G03795 471 / 5e-163 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085400 [exp] 587 / 0 AT5G19670 558 / 0.0 Exostosin family protein (.1) Potri.018G043700 [exp] 507 / 1e-173 AT5G25820 635 / 0.0 Exostosin family protein (.1) Potri.006G239000 [exp] 493 / 6e-168 AT5G25820 607 / 0.0 Exostosin family protein (.1) Potri.006G238900 [exp] 493 / 1e-167 AT5G19670 592 / 0.0 Exostosin family protein (.1) Potri.018G085500 [exp] 479 / 9e-163 AT5G19670 693 / 0.0 Exostosin family protein (.1) Potri.003G079000 [exp] 407 / 6e-137 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.014G170900 [exp] 320 / 1e-103 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.014G171100 [exp] 310 / 2e-99 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G118000 [exp] 302 / 3e-96 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 299 / 2e-95 AT5G25310 518 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10011120 pacid=23167558 polypeptide=Lus10011120 locus=Lus10011120.g ID=Lus10011120.BGIv1.0 annot-version=v1.0 ATGGCTTTCGCTGTCTGGATTCGAAGATCCAACATTGGCAGCATAATTTGGAGGCTGCTGGTAATCATGGGAATGGCAGTTTTTTCTCTGGTTCTTATGC TTGTTCAGCGCCCTTCTTCGTTTTTTTCCAATGGGAGAAATGGAACTTCGTGGTCTCCTTTAGTCGCTCATGAAAGTGCTTCCTGGGTTATTATTCCAGC CAGCAACCCCATAGTTTCAGATGACTCGAATTTGGGTGAAATTCAGTACCAAAACGATTCATCCTCTTCATTATCATTTAATATTGTGGAGGATGTTGGG GATAAGATTGAATCAACCTCCAAAAACAGGAAAGTAGCTAGTGTATCCGCAGCCAAGAGGGTGGGAAGGAAGAATCCGACAACAATATCTCAGATGAACT CACAAATGCTTCACAGCCTTTTTTCAGCTAGTTCTATGAGTGTACAACATCCTTCTGCGCGCGATCGTGAGCTCCGTTCTGCAAGAATGCAGATAGAAAA TGTTCCTATCTTGAAGAGGGATACTGGACTCCATGCTTCTAGTTTCTGGAATGTCTCCAGCTTTATGAGGAGCTACGAGTTGATGGAGCGAACGATGAAA GTGTACATCTACAAAGAAGGAGAGAAACCGGTGTTTCACCAGTCAAGAATGAGGGGTATATATGCTTCAGAGGGATGGTTCATGAAACTGATCAAGGAAA GCAAGAGGTTTGTTGTGAAAGACCCAAGAAGAGCTCACTTATTCTACATACCTTTTAGTTCAGAGATGTTGAGGAAAGAACTATACGGAAGCCCGAAATT GCACACAGTAAAGGATCTTGAACAGCACTTGCAAGGCTATGTGAATCTAGTTTCACAAAAGTACATGTTTTGGAACAGAAGCAATGGAGCTGATCATTTC GTCGTCGGATGCCATGACTGGGCACCAAAATTGACAAGCAGTCCCATGAGGAATTGCATTAGAGTCCTCTGCAATGCCAATGTGGGTAAGGGCTTTCGAA TCGGAAAGGACACGACTTTACCAGTGACAAGCATACGGTCACAGGAGAGACCTACGCAGGATATTGGAGGGAAACCTCCTTATGAAAGGCACATCCTGGC GTTCTTTGCCGGAGGGAACCATGGCTCCCTCCGGCCAGTGCTACTACAACATTGGGCTGCGGATAACAGCAGACCCCACCACACCATGAAGATAATGGGT CCGATGCCGCGGGATGTTGAGAGCAAGAGACTGTACAGGGAGTACATGAAGAGCAGCAAATACTGCATCTGTGCTAGAGGTCACGAAGTCCACACGCCTA GAGTGGTTGAGGCTATCTACTACGAGTGTGTCCCTGTCATAATCTCGGACAACTACGTTCCTCCGTTCTTTGAGATGCTCAACTGGGAGGAATTTGCGGT GTTTGTGTTGGAGAAAGACGTTCCTAAGTTGAAGGAGATTCTGTCGGCCATCCCCGAAGAGAAGTATGTGGCTATGCAGTCAAGTGTGAAGATGGTGCAG CAACATTTCTTGTGGCATAGGAAACCTCTAAAGTATGACTTGTTTCATATGATCCTTCACTCTGTTTGGCACAACAGAGTTTTCGAGGCAAAAGTCGACA ACTTCATAGATGATGAAGTAGAAAGAGTTCCGTGA
AA sequence Show only first row Show all	>Lus10011120 pacid=23167558 polypeptide=Lus10011120 locus=Lus10011120.g ID=Lus10011120.BGIv1.0 annot-version=v1.0 MAFAVWIRRSNIGSIIWRLLVIMGMAVFSLVLMLVQRPSSFFSNGRNGTSWSPLVAHESASWVIIPASNPIVSDDSNLGEIQYQNDSSSSLSFNIVEDVG DKIESTSKNRKVASVSAAKRVGRKNPTTISQMNSQMLHSLFSASSMSVQHPSARDRELRSARMQIENVPILKRDTGLHASSFWNVSSFMRSYELMERTMK VYIYKEGEKPVFHQSRMRGIYASEGWFMKLIKESKRFVVKDPRRAHLFYIPFSSEMLRKELYGSPKLHTVKDLEQHLQGYVNLVSQKYMFWNRSNGADHF VVGCHDWAPKLTSSPMRNCIRVLCNANVGKGFRIGKDTTLPVTSIRSQERPTQDIGGKPPYERHILAFFAGGNHGSLRPVLLQHWAADNSRPHHTMKIMG PMPRDVESKRLYREYMKSSKYCICARGHEVHTPRVVEAIYYECVPVIISDNYVPPFFEMLNWEEFAVFVLEKDVPKLKEILSAIPEEKYVAMQSSVKMVQ QHFLWHRKPLKYDLFHMILHSVWHNRVFEAKVDNFIDDEVERVP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32790			Exostosin family protein (.1)		Lus10011120 [exp]	0	1
AT1G55840			Sec14p-like phosphatidylinosit...		Lus10016628 [exp]	7.5	0.7017
AT1G25580	NAC	ANAC008, SOG1	SUPPRESSOR OF GAMMA RADIATION ...		Lus10041492 [exp]	12.0	0.6684
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10037986 [exp]	14.8	0.7080
AT3G01410			Polynucleotidyl transferase, r...		Lus10014521 [exp]	23.2	0.6987
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10004772 [exp]	26.4	0.6818
AT1G74700		NUZ, TRZ1	tRNAse Z1 (.1)		Lus10023618 [exp]	27.5	0.6750
AT1G48175		TAD1, EMB2191	tRNA adenosine deaminase 1, em...		Lus10028482 [exp]	27.7	0.6631
AT5G50410			unknown protein		Lus10007607 [exp]	32.0	0.6697
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Lus10006797 [exp]	45.2	0.6579
AT5G46920			Intron maturase, type II famil...		Lus10003019 [exp]	46.6	0.6538

Compare expression of checked genes

Lus10011120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.