Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19670 694 / 0 Exostosin family protein (.1) AT5G25820 520 / 0 Exostosin family protein (.1) AT4G32790 516 / 4e-180 Exostosin family protein (.1) AT5G11610 472 / 1e-163 Exostosin family protein (.1.2) AT4G16745 470 / 6e-163 Exostosin family protein (.1.2) AT5G37000 432 / 5e-148 Exostosin family protein (.1) AT5G03795 314 / 4e-102 Exostosin family protein (.1) AT3G07620 293 / 2e-94 Exostosin family protein (.1) AT5G25310 283 / 2e-90 Exostosin family protein (.1) AT5G11130 275 / 1e-87 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043239 [exp] 860 / 0 AT5G19670 748 / 0.0 Exostosin family protein (.1) Lus10012973 [exp] 718 / 0 AT5G19670 716 / 0.0 Exostosin family protein (.1) Lus10034951 [exp] 710 / 0 AT5G19670 701 / 0.0 Exostosin family protein (.1) Lus10000608 [exp] 541 / 0 AT4G32790 630 / 0.0 Exostosin family protein (.1) Lus10002799 [exp] 538 / 0 AT5G25820 627 / 0.0 Exostosin family protein (.1) Lus10023927 [exp] 533 / 0 AT5G25820 561 / 0.0 Exostosin family protein (.1) Lus10011120 [exp] 469 / 3e-162 AT4G32790 501 / 1e-172 Exostosin family protein (.1) Lus10043238 [exp] 459 / 1e-158 AT4G32790 493 / 7e-170 Exostosin family protein (.1) Lus10025178 [exp] 317 / 1e-103 AT5G03795 471 / 5e-163 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085500 [exp] 729 / 0 AT5G19670 693 / 0.0 Exostosin family protein (.1) Potri.006G238900 [exp] 577 / 0 AT5G19670 592 / 0.0 Exostosin family protein (.1) Potri.018G043700 [exp] 555 / 0 AT5G25820 635 / 0.0 Exostosin family protein (.1) Potri.006G239000 [exp] 554 / 0 AT5G25820 607 / 0.0 Exostosin family protein (.1) Potri.018G085400 [exp] 539 / 0 AT5G19670 558 / 0.0 Exostosin family protein (.1) Potri.003G079000 [exp] 481 / 3e-167 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.014G171100 [exp] 340 / 3e-112 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G118000 [exp] 315 / 8e-103 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.014G170900 [exp] 304 / 5e-99 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 304 / 1e-98 AT5G25310 518 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10011121 pacid=23167511 polypeptide=Lus10011121 locus=Lus10011121.g ID=Lus10011121.BGIv1.0 annot-version=v1.0 ATGAAGAAGATCAAAGAAGAAACAAGTGTTCCGATTTTAGTTTCAGGAAATACTTCTGCTGGAGTTAGTATACCTGCGAAGAAAAAGATGAGGTGTGAGA TGCCACCAAAATCAGTTACAACATTTGACGAGATGAACCATTTGTTAGCAAGGCATCGCCGTTCTTCTCGGGCAATGAGGCCAAGATGGTCTTCGGTACG TGATAAGGAGATGTTGGCTATGAAGTCACAGATTGAAAATGCAGCTGTGCTGGTGAAAGATCCAGATCTTTATGCTCCACTCTTCAGGAACGTTTCCCAG TTCAAAAGGAGTTATGAGATTATGGAACGCACTCTCAAGGTCTATGTGTACAAGGATGGAAAGAAGCCAATCTTTCATCTACCAATACTGAAGGGATTGT ATGCTTCAGAAGGATGGTTTGTGAAACTAATGGAAGGAAGTAAGCAATTCCTGGTGAAGGACCCTCGAAAGGCACACCTGTTCTACATGCCATTCAGTTC GCGAATGCTCGAGTACACTCTCTACGTGCGGAATTCACATAACAGGACGAATCTACGTCAGTACCTAAAAGAGTACGCCGGTTCAATTGCAGCCAAATAT CCCTATTGGAACCGAACTGGCGGAGCAGACCATTTTCTTGTTGCCTGCCATGATTGGGCTCCATATGAGACGAGGCACCATATGGAACATTGTCCTAAAG CCCTCTGCAATGCTGATGTTACGACAGGCTTCAAAATAGGGAGGGACGTATCTCTTCCCGAAACATACGTCCGAGCAGCTACTAATCCTCTCCGCGACCT AGGAGGGAAACCACCTTCCGAAAGGCACATTCTTGCCTTCTATGCTGGAAGTATGCACGGATATCTTCGTCGAATTCTAAGCAAGCACTGGAAAGACAAG GACCCTGATATGAAGATATGGGGCCGTATGCCTCTTGGTGTAGCAAGCAAAATGAACTACATCAGCCACATGAAGAGCAGCAAGTACTGTATCTGCCCCA AAGGTTACGAGGTCAACAGCCCGCGAGTCGTCGAGTCCATCTTCTACGAATGTGTGCCTGTTATCATATCAGACAACTTCGTACCACCATTTTTCGAGGT GTTCGATTGGAGCGCCTTCTCGATTATTCTTGCGGAGAAAGACATTCCTAATCTGAAAGAGATTCTGCTGTCAGTGCCAGAAAAGCGATACATTGAGCTG CAACTTGGGGTGAGGAAAGTTCAAAGGCATTTCCTTTGGCATGCAAAGCCTGTGAAATATGATCTCTTTCTCATGACCCTTCACTCAATTTGGTATAATC GAGTTTATCAGATCAAACCACGATGA
AA sequence Show only first row Show all	>Lus10011121 pacid=23167511 polypeptide=Lus10011121 locus=Lus10011121.g ID=Lus10011121.BGIv1.0 annot-version=v1.0 MKKIKEETSVPILVSGNTSAGVSIPAKKKMRCEMPPKSVTTFDEMNHLLARHRRSSRAMRPRWSSVRDKEMLAMKSQIENAAVLVKDPDLYAPLFRNVSQ FKRSYEIMERTLKVYVYKDGKKPIFHLPILKGLYASEGWFVKLMEGSKQFLVKDPRKAHLFYMPFSSRMLEYTLYVRNSHNRTNLRQYLKEYAGSIAAKY PYWNRTGGADHFLVACHDWAPYETRHHMEHCPKALCNADVTTGFKIGRDVSLPETYVRAATNPLRDLGGKPPSERHILAFYAGSMHGYLRRILSKHWKDK DPDMKIWGRMPLGVASKMNYISHMKSSKYCICPKGYEVNSPRVVESIFYECVPVIISDNFVPPFFEVFDWSAFSIILAEKDIPNLKEILLSVPEKRYIEL QLGVRKVQRHFLWHAKPVKYDLFLMTLHSIWYNRVYQIKPR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19670			Exostosin family protein (.1)		Lus10011121 [exp]	0	1
AT2G43780			unknown protein		Lus10037305 [exp]	1.7	0.8400
AT1G14300			ARM repeat superfamily protein...		Lus10037185 [exp]	5.7	0.8321
					Lus10012945 [exp]	9.5	0.8381
AT5G51960			unknown protein		Lus10036504 [exp]	10.5	0.8202
AT1G01150			Homeodomain-like protein with ...		Lus10026308 [exp]	16.8	0.8159
AT5G19670			Exostosin family protein (.1)		Lus10043239 [exp]	18.5	0.8212
AT1G55340			Protein of unknown function (D...		Lus10010312 [exp]	22.6	0.8092
AT1G29990		PFD6, PDF6	prefoldin 6 (.1)		Lus10023313 [exp]	34.3	0.7966
AT3G09890			Ankyrin repeat family protein ...		Lus10014410 [exp]	36.7	0.7986
AT3G46020			RNA-binding (RRM/RBD/RNP motif...		Lus10040854 [exp]	39.9	0.8019

Compare expression of checked genes

Lus10011121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.