Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44970 425 / 3e-145 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042889 [exp] 449 / 1e-154 AT2G44970 643 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10028185 [exp] 450 / 9e-153 AT2G44970 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085600 [exp] 565 / 0 AT2G44970 470 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.014G055900 [exp] 458 / 2e-158 AT2G44970 639 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011122 pacid=23167504 polypeptide=Lus10011122 locus=Lus10011122.g ID=Lus10011122.BGIv1.0 annot-version=v1.0 ATGGGAGATGTATTTGTTCACGAGGGAGCAAAAGGAATACCAGAAATTCTTGAAGGATCGGTAGAAATTCCTTCCCCTGTAAGTGGTCAATCCTTCATCA GTCTCAATTCATTGAGATGTATTGATGTTGCAGAGAGTCTCGTACTCCGGGATGTTGCTGCATGGTCGGGAAATTTTTTAACCAGTAACCCTGCACCAAC TGCAAGATCCTTAAGCACTGCTGGCCTCTGTAAGTCTCATGTGAGAGGTTGTCCCTCATGTTCTAGTTACCGCATCGCTGACAACTCCCCTGGATGCTGC GGAGAAGGAACTTCACAATCCATTGAAGGATTAAATGTAAATACAGGATACGATGTTTTGGATGCAAGTTACAGTCATCAACACATCTGCCTCGTTATTA AAGGTGTTGCATCGCGAGTATACAAAACACTGCATGGTTCAAGTGATGATATTGGGTGGTTGCAAAGCACTCCTGGAATGCCTCCTGTCAGAGATGGTAC GCCTAGGTTCTTAGAGCTTCTTGAGAATATCAGCAACCATGGTCCCTTGTATTTCGTGTCCACGAAGCGGTTCTTTTCGAAGATGGGTCTTGCTTGTCAT ATTGCAAAAATTCATAGTGAGGCATCAGTGGAGCACAATGCATTTGAACTGAAACAGTACATTGATGAACTCTACTGGGGTTCAGGGAAGCGTGTGATGC TTCTTGGACACAGTAAGGGAGGAGTTGATGCTGCTGCTGCATTGTCAATCTACTCATCGGACTTGAAAGACAAAGTTGCCGGTCTTGCATTGGTTCAGAG CCCTTATGGGGGCACACCGATCGCTTCAGACATTCTTCGCGAGGGACAGATTGCCGATCGAGAAACCAGGAGGATAATGGAATTCCTGATATGCAAGCTC ATTAAGGGCGACATACGAGCGTTGGAAGATCTTACGTATGATAAGCGGAGAGAGTTCATAATGAGCCACAACCTGCCCGAAGAAATCCCGATAATCTGTT TCCACTCAGAAGCAAGCATTGCTCCCGGTGTACTTGCCACTATGACCCAGATAGCACACTCGGAGCTTCCATGGCTCCCACTTGCTAGTGTTGGCAGTGG TGAGTCTGAAGAAAATACTGTTCAAGTGGGGCGGCAGGTACCGGTGGTGATGCCTATTTCTGGTGCAATGGCGCTGTGTGCTCTCCACTTGCAGCTCCGG TATGGGGAGAAGAGCGACGGGTTGGTGACTTGCCGAGATGCTGAAGTTCCGGGTTCAGTTGTGGTGAGACCGGGCAGGAAACTTGATCATGGCTGGATGG TTTACACCTCCAAGAAAAGGGACCCAACGGATCCTGATTCTGGTCAGATGTGTGAGGCTCTGCTGACCATGCTTGTTGAACTTGGCAAGAACAAGATGAA AGCCAAATCTCTATGA
AA sequence Show only first row Show all	>Lus10011122 pacid=23167504 polypeptide=Lus10011122 locus=Lus10011122.g ID=Lus10011122.BGIv1.0 annot-version=v1.0 MGDVFVHEGAKGIPEILEGSVEIPSPVSGQSFISLNSLRCIDVAESLVLRDVAAWSGNFLTSNPAPTARSLSTAGLCKSHVRGCPSCSSYRIADNSPGCC GEGTSQSIEGLNVNTGYDVLDASYSHQHICLVIKGVASRVYKTLHGSSDDIGWLQSTPGMPPVRDGTPRFLELLENISNHGPLYFVSTKRFFSKMGLACH IAKIHSEASVEHNAFELKQYIDELYWGSGKRVMLLGHSKGGVDAAAALSIYSSDLKDKVAGLALVQSPYGGTPIASDILREGQIADRETRRIMEFLICKL IKGDIRALEDLTYDKRREFIMSHNLPEEIPIICFHSEASIAPGVLATMTQIAHSELPWLPLASVGSGESEENTVQVGRQVPVVMPISGAMALCALHLQLR YGEKSDGLVTCRDAEVPGSVVVRPGRKLDHGWMVYTSKKRDPTDPDSGQMCEALLTMLVELGKNKMKAKSL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10011122 [exp]	0	1
AT2G47830			Cation efflux family protein (...		Lus10040922 [exp]	1.0	0.8243
AT1G16040			unknown protein		Lus10015585 [exp]	3.9	0.8151
AT1G01770			unknown protein		Lus10036349 [exp]	4.9	0.8167
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Lus10036939 [exp]	5.3	0.7882
AT4G30830			Protein of unknown function, D...		Lus10035817 [exp]	9.5	0.6995
					Lus10033126 [exp]	10.1	0.7796
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Lus10002369 [exp]	11.3	0.7223
AT3G52120			SWAP (Suppressor-of-White-APri...		Lus10015703 [exp]	11.5	0.7753
AT1G70740			Protein kinase superfamily pro...		Lus10001595 [exp]	14.3	0.7501
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10029336 [exp]	14.9	0.7632

Compare expression of checked genes

Lus10011122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.