Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19690 1186 / 0 STT3A staurosporin and temperature sensitive 3-like A (.1) AT1G34130 644 / 0 STT3B staurosporin and temperature sensitive 3-like b (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043241 [exp] 1309 / 0 AT5G19690 1233 / 0.0 staurosporin and temperature sensitive 3-like A (.1) Lus10041985 [exp] 669 / 0 AT1G34130 1312 / 0.0 staurosporin and temperature sensitive 3-like b (.1) Lus10017990 [exp] 664 / 0 AT1G34130 1264 / 0.0 staurosporin and temperature sensitive 3-like b (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086000 [exp] 1220 / 0 AT5G19690 1157 / 0.0 staurosporin and temperature sensitive 3-like A (.1) Potri.012G036300 [exp] 665 / 0 AT1G34130 1256 / 0.0 staurosporin and temperature sensitive 3-like b (.1) Potri.015G028300 [exp] 658 / 0 AT1G34130 1245 / 0.0 staurosporin and temperature sensitive 3-like b (.1) Potri.006G163566 [exp] 0 / 1 AT5G19690 209 / 9e-63 staurosporin and temperature sensitive 3-like A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF02516 [flax] [poplar] STT3 Oligosaccharyl transferase STT3 subunit
Representative CDS sequence Show only first row Show all	>Lus10011124 pacid=23167502 polypeptide=Lus10011124 locus=Lus10011124.g ID=Lus10011124.BGIv1.0 annot-version=v1.0 ATGGGGAGTCCGGACAGCACCACTGATTCGCTGGCGGCGGCGTCCAGTCTGCGAAATGCGTTCGGCGGCGTTCTCTCTTTTATCATACTCCTTCTGATCG GAGTCCTCGCCTTCTCGATCCGCCTCTTCTCTGTGATAAAATATGAAAGCGTGATTCACGAGTTTGATCCTTACTTCAATTATCGGGTTACTCAGTTTTT GTCGAAGAATGGGATATACGACTTTTGGAACTGGTTCGATGATCGAACATGGTATCCTCTTGGGCGAGTCATTGGTGGAACTGTTTTTCCCGGTTTGATG TTGACAGCTGGCACAATGTGGAAGGTCCTGAATTCCTTGAACATTCCTCTCTCCGTGGAGACTGTTTGTGTGTTTACTGCACCAATTTTCTCCGCGTTTG CTTCCTGGGCAGCTTATCTATTGACCAAAGAAGTTAAAGGTCCTGGGGCTGGACTCGCAGCAGCAACACTCTTGGCCATGGTTCCGTCATACATATCTCG TTCTGTGGCTGGGAGCTATGACAATGAAGCTGTTGCTATATTTGCATTAGTCTTCACCTTCTATCTTTATATCAAGACACTAAATACAGGGTCCCTTTTC TATGCAACTCTGAATTCCCTAGCTTACTTTTATATGGTCTGCTCATGGGGTGGTTACACCTTCATTATTAATCTGATTCCAATGCACGTGATGCTCTGCA TTGTGACGGGTCGTTATTCTTCTCGGCTGTACATTGCGTATGCACCTCTTGTGATATTGGGTACTTTACTAGCTTCTTTGGTGCCCGTTGTTGGTTTTAA TGCCGTCATGACTTCTGAACATTTTGCTTCATTCCTGGCAAAATGTAGAGTAAACTGTTATGCTTTCATTTCTTTATCTCATCCCAATCTTGGCCAGGTC TTCATTATTATCCATGTAGTGGCCCTTGTGCACTACATTAAAGGGATCCTCTCTCCAAAAATGTTCAAAGTTGCTGTGACACTTGTTGTTTCTGTTGGCC TAGCAGTCTGTTTTGCGGTGATTGGAGTTCTTATAGCAGTGGTTGCATCAAGCCCAACAAAGGGATGGAGTGGGCGTAGTCTAACTCTCCTTGACCCGAC TTATGCAAGCAAGTACATTCCAATTATTGCTAGTGTTAGTGAACATCAACCTCCTACTTGGCCATCATACTTCATGGACATCAATGTTTTAGCTTTCTTG GTTCCAGCTGGGATCATCGCCTGCTTCATGCCATTATCCGACTCAAGTTCTTTCCTCATCCTTTACATTGTGACTTCTGTTTACTTTTCTGGTGTCATGG TACGGCTGATGCTTGTACTTGCCCCAGCCGCATGCATTTTGTCTGGAATTGCACTTTCTGAAGCTTTTAATGTGTTGACTCGGTCAATCAAGTTTCAGCT ACCTGGAATGGCAGGGATCTCCAATGTTGCTAAGGAAAATGGTTCAAGTTCTGCGGTGACACAAGAAAATGGACCAAAGACTGAAGAAGTTCCAAAAGAG AAACCACAGAGAAAGAACAAGAAAAAAGAAAAAGAGAATGCGGAGAAGGTGGAGAAGGTGCCCACGCCAGCAAAAACTGAGAGAAGGCTTCTTGTACTAC CTTTGGAAGCGTCATTCATTGCAGTTCTCTTAATTGTGTTGCTTGGTGCCTTCTATGTGGTTCATTGTGTATGGGCAGCAGCTGAAGCTTATTCAGCCCC TTCGATTGTTCTAACATCTTACTCAAATGATGGTGGCTTGCATGTCTTTGATGATTTTAGAGAGTCATATGCTTGGTTGAGCCACAATACTGATGTTGAT GACAAAGTTGCATCATGGTGGGACTATGGTTATCAAACCACTGCGATGGCAAACCGCACTGTTCTTGTTGATAATAACACATGGAACAACACACATATCG CAACTGTGGGTACTGCCATGTCATCTCCTGAGAAACAAGCCTGGGAAATCTTCCATTCACTGGACGTGAAATATGTTCTAGTAGTCTTCGGAGGTCTTGT TGGCTATCCTAGTGATGACATCAACAAGTTCCTGTGGATGGTTCGAATAGGAGGGGGCGTATTCCCGCACATCAAAGAACCAGATTACCTGGTTAGCTTT ATGATTCTTTTACACTGTCTGGCTCGCTTCGGGCTTTTTGGCTGCATCCTTGCTGTCGGAGGAGACGGGAAGTACAGGATAGACAATCAAGCTACTCCAA CGATGTTGAACTCTCTTATGTACAAACTGTCATACTACAGGTTTGTTGAAACAGACGGGAAAGGATTTGACAGAGTAAGAAGAACAGAGATAGGGAAGAA ACATTTCAAGCTCACCCATTTCGAAGAGGTATTCACCACTCACCATTGGATGGTTCGAATTTACAAACTGAAAGCTCCAAGGAACAGGATCCGTGGAAAG ACTAAGAAATCGAAGTCACCGAAATCAGTAAGCTCAAAGAGAGATGGAAGGGAAAGGAGGAATCCATGGCACTAA
AA sequence Show only first row Show all	>Lus10011124 pacid=23167502 polypeptide=Lus10011124 locus=Lus10011124.g ID=Lus10011124.BGIv1.0 annot-version=v1.0 MGSPDSTTDSLAAASSLRNAFGGVLSFIILLLIGVLAFSIRLFSVIKYESVIHEFDPYFNYRVTQFLSKNGIYDFWNWFDDRTWYPLGRVIGGTVFPGLM LTAGTMWKVLNSLNIPLSVETVCVFTAPIFSAFASWAAYLLTKEVKGPGAGLAAATLLAMVPSYISRSVAGSYDNEAVAIFALVFTFYLYIKTLNTGSLF YATLNSLAYFYMVCSWGGYTFIINLIPMHVMLCIVTGRYSSRLYIAYAPLVILGTLLASLVPVVGFNAVMTSEHFASFLAKCRVNCYAFISLSHPNLGQV FIIIHVVALVHYIKGILSPKMFKVAVTLVVSVGLAVCFAVIGVLIAVVASSPTKGWSGRSLTLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFL VPAGIIACFMPLSDSSSFLILYIVTSVYFSGVMVRLMLVLAPAACILSGIALSEAFNVLTRSIKFQLPGMAGISNVAKENGSSSAVTQENGPKTEEVPKE KPQRKNKKKEKENAEKVEKVPTPAKTERRLLVLPLEASFIAVLLIVLLGAFYVVHCVWAAAEAYSAPSIVLTSYSNDGGLHVFDDFRESYAWLSHNTDVD DKVASWWDYGYQTTAMANRTVLVDNNTWNNTHIATVGTAMSSPEKQAWEIFHSLDVKYVLVVFGGLVGYPSDDINKFLWMVRIGGGVFPHIKEPDYLVSF MILLHCLARFGLFGCILAVGGDGKYRIDNQATPTMLNSLMYKLSYYRFVETDGKGFDRVRRTEIGKKHFKLTHFEEVFTTHHWMVRIYKLKAPRNRIRGK TKKSKSPKSVSSKRDGRERRNPWH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19690		STT3A	staurosporin and temperature s...		Lus10011124 [exp]	0	1
AT5G19690		STT3A	staurosporin and temperature s...		Lus10043241 [exp]	3.9	0.7712
AT5G19820		EMB2734	embryo defective 2734, ARM rep...		Lus10039172 [exp]	13.4	0.8050
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10033092 [exp]	18.4	0.8020
AT3G45850			P-loop containing nucleoside t...		Lus10018120 [exp]	23.6	0.7991
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10015333 [exp]	27.6	0.7900
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Lus10024805 [exp]	34.6	0.7857
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10036747 [exp]	34.8	0.7729
AT1G49040		SCD1	STOMATAL CYTOKINESIS-DEFECTIVE...		Lus10023563 [exp]	35.0	0.7842
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Lus10025461 [exp]	36.7	0.7803
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Lus10022176 [exp]	44.2	0.7642

Compare expression of checked genes

Lus10011124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.