Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25880 840 / 0 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT1G79750 828 / 0 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) AT2G19900 824 / 0 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT5G11670 815 / 0 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) AT2G13560 355 / 4e-115 NAD-ME1 NAD-dependent malic enzyme 1 (.1) AT4G00570 349 / 5e-113 NAD-ME2 NAD-dependent malic enzyme 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043025 [exp] 949 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10012964 [exp] 884 / 0 AT2G19900 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) Lus10025823 [exp] 853 / 0 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10014149 [exp] 838 / 0 AT1G79750 951 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10037561 [exp] 834 / 0 AT1G79750 949 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10005484 [exp] 806 / 0 AT5G25880 886 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10005483 [exp] 739 / 0 AT5G11670 793 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) Lus10034963 [exp] 691 / 0 AT1G79750 714 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10006036 [exp] 573 / 0 AT5G11670 696 / 0.0 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086700 [exp] 871 / 0 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.018G046600 [exp] 864 / 0 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.006G236500 [exp] 864 / 0 AT5G25880 945 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.003G049300 [exp] 838 / 0 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.001G189700 [exp] 837 / 0 AT1G79750 950 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.002G156000 [exp] 353 / 7e-115 AT4G00570 903 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G079900 [exp] 351 / 9e-114 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.002G135300 [exp] 343 / 1e-110 AT2G13560 1007 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.014G043700 [exp] 335 / 2e-107 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00390 [flax] [poplar] malic Malic enzyme, N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03949 [flax] [poplar] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10011125 pacid=23167527 polypeptide=Lus10011125 locus=Lus10011125.g ID=Lus10011125.BGIv1.0 annot-version=v1.0 ATGGCCACCCCGATCACCGACCCTGCTAAGTCCACTGTCGCCGGTGGCGCCGAAGATGTCTACGGCGAGGATTTCGCCACTGAGGACCAGCTCGTCACTC CTTGGACCGTCTCCGTCGCCAGCGGATACTCTCTGCTCAGAGATCCGCGTCATAACAAGGGACTCGCCTTCACTGAGAATGAGAGGGATGCGCACTACTT GCGTGGCCTTCTCCCACCCGTGGTTCTCTCCCAGCAGCTTCAGGAGAAGAAGTTGATGAACTCCATTAGACAGTATCAGCTTCCAATCCAGAAGTATATG GCTATGATGGAACTTGAGGAGAGAAATGAAAGGCTGTTTTACAAGCTTCTCATTGACAATGTTGAGGAATTGCTGCCAGTTGTGTACACTCCCACTGTTG GGGAAGCTTGCCAGAAGTATGGCAGCATATTCAGAAGGCCTCAGGGTCTATACATCAGTCTGAAAGAGAAGGGGAGAGTTCTTGATGTATTGAAAAACTG GCCTGAGAGGAATATTCAAGTCATTGTCGTGACTGATGGTGAAAGAATTTTGGGTCTAGGAGATCTCGGGACTCAGTGTTTGCCTATAACTATCGATGTT GGTACCAATAACGAGACATTGTTGAATGATGAATTCTATATTGGACTCAGACAAAGAAGGGCTAGGGGCCAGGAATATTCTGAACTTCTCCATGAATTCA TGACAGCAGTAAAGCAGATCTACGGAGAAAAAGTTCTGATTCAGTATGAAGATTTCGCCAACCACAATGCTTTTGAGCTGCTTGAGAAGTATAAAACAAC TCATCTTGTCTTCAATGATGATATTCAGGGGACGGCATCCGTGGTCCTTTCAGGAGTTGTTGCGTCATTGAAATTGCTTGGGGGGACACTTGCCGATCAC AAGTTCCTCTTCCTTGGTGCTGGAGAAGCTGGTACCGGCATAGCTGAGCTTATAGCACTCGAGATGTCCAAAAGGACAAATACTCCACTGGATGAGTGTC GCAAGAGGATCTACTTGGTTGATTCAAAGGGTTTGATTGTCAAGTCCCGATTAGAATCTCTACAACACTTCAAGAAGCCTTGGGCTCATGATCATGAGCC TGTCAAGAACCTATTAGATGCTGTCCAGGCACTGAAACCAACAGTTCTGATTGGAGCATCGGGCATGGGAAAGACATTCACAAAGGAAGTTGTTGAAGCC ATGTCTACTTTCAATGAGAAACCTCTAATCATGGCGCTGTCCAACCCAACTTCACAAGCTGAGTGTACTGCGGAAGAAGCCTACACCTGGAGTAAGGGCA AAGCCATATTCGCGAGTGGAAGTCCTTTTGATCCAGTTGAATACGAGGGCAAGGTGTTTGTTCCTGGGCAGGGAAACAACGCATACATCTTCCCAGGATT CGGGTTGGGCGTGGTTATGTCTGGCGCTATTCGTGTCCACGATGACATGCTTCTCGCAGCTTCTGAAGCTTTGGCGGAGCAAGTGACGGATGCAGAATAT GAGAAGGGGCTGATCTACCCACCATTCTCCAAGATCAGAAAGATATCAGCTGAGATTGCTGCTAAGGTTGCTGCCAAGGCTTACGACCTCGGTTTGGCAA GTCGGCTGCCTCGTCCAGCAGATCTGGTGAAGTATGCAGAGAGCTGCATGTACAGCCCTGTGTACAGAAACTTCAGATGA
AA sequence Show only first row Show all	>Lus10011125 pacid=23167527 polypeptide=Lus10011125 locus=Lus10011125.g ID=Lus10011125.BGIv1.0 annot-version=v1.0 MATPITDPAKSTVAGGAEDVYGEDFATEDQLVTPWTVSVASGYSLLRDPRHNKGLAFTENERDAHYLRGLLPPVVLSQQLQEKKLMNSIRQYQLPIQKYM AMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGRVLDVLKNWPERNIQVIVVTDGERILGLGDLGTQCLPITIDV GTNNETLLNDEFYIGLRQRRARGQEYSELLHEFMTAVKQIYGEKVLIQYEDFANHNAFELLEKYKTTHLVFNDDIQGTASVVLSGVVASLKLLGGTLADH KFLFLGAGEAGTGIAELIALEMSKRTNTPLDECRKRIYLVDSKGLIVKSRLESLQHFKKPWAHDHEPVKNLLDAVQALKPTVLIGASGMGKTFTKEVVEA MSTFNEKPLIMALSNPTSQAECTAEEAYTWSKGKAIFASGSPFDPVEYEGKVFVPGQGNNAYIFPGFGLGVVMSGAIRVHDDMLLAASEALAEQVTDAEY EKGLIYPPFSKIRKISAEIAAKVAAKAYDLGLASRLPRPADLVKYAESCMYSPVYRNFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10011125 [exp]	0	1
AT5G25880		ATNADP-ME3	Arabidopsis thaliana NADP-mali...		Lus10043025 [exp]	1.0	0.9236
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Lus10004107 [exp]	7.6	0.8189
AT4G20140		GSO1	GASSHO1, Leucine-rich repeat t...		Lus10002215 [exp]	11.8	0.8453
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10009890 [exp]	14.5	0.8549
AT4G38360		LAZ1	LAZARUS 1, Protein of unknown ...		Lus10003321 [exp]	27.3	0.8594
AT3G11820		PEN1, AT-SYR1, ...	PENETRATION1, SYNTAXIN RELATED...		Lus10029373 [exp]	30.4	0.8116
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10035194 [exp]	31.7	0.8547
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Lus10019478 [exp]	47.3	0.8509
AT2G21120			Protein of unknown function (D...		Lus10010893 [exp]	50.9	0.8448
AT1G27700			Syntaxin/t-SNARE family protei...		Lus10018703 [exp]	53.1	0.7978

Compare expression of checked genes

Lus10011125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.