Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37410 238 / 3e-79 ATTIM17-2 TRANSLOCASE OF THE INNER MEMBRANE 17, translocase inner membrane subunit 17-2 (.1.2) AT1G20350 233 / 7e-78 ATTIM17-1 translocase inner membrane subunit 17-1 (.1) AT5G11690 133 / 2e-39 ATTIM17-3 ARABIDOPSIS THALIANA TRANSLOCASE INNER MEMBRANE SUBUNIT 17-3, translocase inner membrane subunit 17-3 (.1) AT1G18320 41 / 0.0002 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) AT3G10110 41 / 0.0002 MEE67 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043029 [exp] 336 / 4e-118 AT2G37410 288 / 3e-99 TRANSLOCASE OF THE INNER MEMBRANE 17, translocase inner membrane subunit 17-2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G164980 [exp] 278 / 2e-95 AT2G37410 234 / 3e-78 TRANSLOCASE OF THE INNER MEMBRANE 17, translocase inner membrane subunit 17-2 (.1.2) Potri.008G176500 [exp] 275 / 2e-94 AT2G37410 228 / 1e-75 TRANSLOCASE OF THE INNER MEMBRANE 17, translocase inner membrane subunit 17-2 (.1.2) Potri.018G087900 [exp] 273 / 2e-93 AT2G37410 227 / 3e-75 TRANSLOCASE OF THE INNER MEMBRANE 17, translocase inner membrane subunit 17-2 (.1.2) Potri.001G281200 [exp] 40 / 0.0003 AT3G10110 205 / 4e-68 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1) Potri.009G076400 [exp] 39 / 0.0008 AT3G10110 194 / 1e-63 maternal effect embryo arrest 67, Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02466 [flax] [poplar] Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence Show only first row Show all	>Lus10011128 pacid=23167515 polypeptide=Lus10011128 locus=Lus10011128.g ID=Lus10011128.BGIv1.0 annot-version=v1.0 ATGGGCACGCCGGAGACATCCAGGGAGCCATGCCCCGACCGCATCCTCGATGACATCGGCGGTGCATTCGGCATGGGCGCAGTCGGCGGCTCTGCCTTCC ACTTTATCAAAGGCGTCTACAACTCCCCCACCGGAACTCGCTTCATGGGTGGAACTCAGGCCGTCCGGATGAACGCACCTCGAGTCGGTGGAAGCTTCGC CGTCTGGGGCGGCCTCTTCTCTGCTTTCGATTGCACGATGGTCTACGTCCGCCAGAAAGAAGATCCGTGGAACTCCATCTTTGCTGGCGCCGCTACAGGA GGGTTCCTCGCTATGCGTCAAGGTCTTGGCGCCTCCGCTCGATCCGCCGCCTTTGGCGGAGTTCTGTTGGCTCTGATCGAAGGCGCTGGGATCATGCTCA ATAAGGTCATGAGTCCGCCGCAGAACATGCCAGTGATGATCGATGAACCTGCCCCTGCTATGGCCGGTGGACCGGGTTTGCCAATGGGATTTCCGGGCCA ACCGCAAGCTCAGTCTATGCCGCAGGAGCTGCCTTCACAGGGTCAAACGGAATCGGGTTCATGGTTTGGTGGGGGGTGGTTTGGCGGAGGGAAGAAGAAT GAAGCTGCTGCTTCCTCGAATAGCGGAAGCAAGACGGAAGTTCTTGAGAGCTTTGACGCACCTCCGGTCCCAAGTTTTGAATACATGTGA
AA sequence Show only first row Show all	>Lus10011128 pacid=23167515 polypeptide=Lus10011128 locus=Lus10011128.g ID=Lus10011128.BGIv1.0 annot-version=v1.0 MGTPETSREPCPDRILDDIGGAFGMGAVGGSAFHFIKGVYNSPTGTRFMGGTQAVRMNAPRVGGSFAVWGGLFSAFDCTMVYVRQKEDPWNSIFAGAATG GFLAMRQGLGASARSAAFGGVLLALIEGAGIMLNKVMSPPQNMPVMIDEPAPAMAGGPGLPMGFPGQPQAQSMPQELPSQGQTESGSWFGGGWFGGGKKN EAAASSNSGSKTEVLESFDAPPVPSFEYM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Lus10011128 [exp]	0	1
AT2G47840		AtTic20-II	translocon at the inner envelo...		Lus10026842 [exp]	3.9	0.8727
AT3G15210	AP2_ERF	ATERF4, RAP2.5...	RELATED TO AP2 5, ethylene res...		Lus10029987 [exp]	4.8	0.8863
AT3G08640			Protein of unknown function (D...		Lus10035607 [exp]	7.5	0.8795
AT3G22530			unknown protein		Lus10004901 [exp]	8.9	0.8625
AT1G07310			Calcium-dependent lipid-bindin...		Lus10040692 [exp]	14.1	0.8551
AT3G15040			Protein of unknown function, D...		Lus10029411 [exp]	15.7	0.8608
AT1G15710			prephenate dehydrogenase famil...		Lus10023121 [exp]	16.4	0.8532
AT2G31670			Stress responsive alpha-beta b...		Lus10017873 [exp]	18.2	0.8573
AT2G17265		DMR1, HSK	DOWNY MILDEW RESISTANT 1, homo...		Lus10022990 [exp]	19.7	0.8483
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10012104 [exp]	19.8	0.8503

Compare expression of checked genes

Lus10011128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.