Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19870 471 / 5e-161 tRNA/rRNA methyltransferase (SpoU) family protein (.1) AT4G38020 48 / 8e-06 tRNA/rRNA methyltransferase (SpoU) family protein (.1) AT4G15520 43 / 0.0002 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043030 [exp] 982 / 0 AT2G19870 473 / 7e-162 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10012771 [exp] 48 / 5e-06 AT4G15520 348 / 2e-123 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10034004 [exp] 47 / 2e-05 AT4G15520 346 / 1e-122 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Lus10025709 [exp] 42 / 0.0009 AT4G38020 337 / 2e-115 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G087800 [exp] 581 / 0 AT2G19870 499 / 8e-171 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Potri.005G147600 [exp] 52 / 5e-07 AT4G38020 335 / 5e-114 tRNA/rRNA methyltransferase (SpoU) family protein (.1) Potri.008G198200 [exp] 47 / 8e-06 AT4G15520 347 / 9e-123 tRNA/rRNA methyltransferase (SpoU) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0101 [flax] [poplar] PELOTA PF08032 [flax] [poplar] SpoU_sub_bind RNA 2'-O ribose methyltransferase substrate binding CL0098 [flax] [poplar] SPOUT PF00588 [flax] [poplar] SpoU_methylase SpoU rRNA Methylase family
Representative CDS sequence Show only first row Show all	>Lus10011129 pacid=23167578 polypeptide=Lus10011129 locus=Lus10011129.g ID=Lus10011129.BGIv1.0 annot-version=v1.0 ATGTGTAGTAATCTAGCAAGAAGCCAGGCATTTCCATTTGCAATTCGGTTTTCCTCGAAATCCAGATGCTTTCCTCAATTCCACCACCCTAAACCCTCCT TAAACCCTACTTTCATCAAATATGCATTGTATTCTCTTGATTCCAGCTTTATCCTGTCTTCCACTAGACTTAGAGTTGTTAGGAGCTTTTCCACTTCACA ACAGAGGAATGTAGGTGCTGTTAGAACTGGAAAGTCGCTTCCTTGGTTGAACTCTAATTCTAGCAAAGCTAAGGATTCAGGGAAGCGTACCGTTTCTCCT TGGGAGAAATCACTTCAGAGTTTAGAGAAAGTTAGCGGAGACACAACCCACCATGATAATGAGAAGGAGAAATTGAAGAGAAGTAGTTCCTCATCATATA AGAAAGAAGGTGGCAAAAGGGTAGAGAACAATAGGTCAGATAGAAGGACTATGCGCTCTGCTGTAGATGCATATGGACGAAAACCGACCAGTGGAAGGAA GAATTTCGATGATTACGCCAAGAAGGACGATAATCTTGAGCAAGAAGAACCATCGGAGGCTGCTGTGGATACTCCTAGATGGGATAAAATCAAGCCTAGG AGAGGAGGATTGTCAAGCTCGAATGAGAAACCCGAGTTCCAGAGGTGGAATAGTCAGGATAACTGGGGGAGAAAGACTTGGAAAGAAGCTACTGAATCAA GTCTACCGAAAATCGTGGGTCAAGGTGTTTATGGAGTTGGTCCTGTTCTGGCTGCATTATCCGCTGGAAGAAGAGAGCTTTACATGTTGTATGTTCAGCA AGGGCTGGACTTGAGCAGCAGCAATGCCAGGAAGAAGAAAGACAAGAAAGGGTTCGAGAAGGTGTTAAAGATGGCCGAGAAAATCGGATTAACCATAACC GATGTTTCCAAGCATGATTTGAATATGATTGCTGATAACAGGCCTCATCAGGGACTTATACTGGATGCTTCTCCATTGGAGATGGTGCACATCAAGGAAT TGGAAGCTGTTTCCCCCGGCGAGGAAGAAAACAACTCCTCTCTTTGGGTTGCTCTAGATGAAGTTACGGATCCTCAGAATTTAGGGGCCATCATTCGGTC TGCTTACTTCTTCGGTGCCTCGGGAGTGGTGTTATGTGCTAAGAATTCAGCTCCACTGAGCGGTGTGGTGAGCAAGGCAAGTGCAGGATCTCTGGAGCTC ATGGAGCTTCGGTATTGTAAGAACATGATGCAGTTTTTGGTATTGTCGGCTGAGAATGGATGGCGAGTTATCGGTGGTTCTGTTTCTTCGAGAGCGGTTC CTTTGGACGAAATCGCGCCTGGCGAACCGACTATCCTTGTTTTGGGCAGTGAGGGCACTGGATTGAGGCCTTTGGTTGAGAGATCGTGTACTCAGTTGGT TCGTATCCCGGGGAACGTTCCTGTGGATATAGCGGCTGGTGGGGAGAGTGATGCTGTGGATGGTGGTGAAGAGACGAATGACCTTCATCATTCGAGCAAA GAGTTCCAGTCATTTATGGCAGTGGAGAGCTTGAATGTTAGTGTTGCAGCTGGAGTCATGCTTCACCAATTGATCGGGAAACAGACGACAGATGCTGATA TTGTCTGA
AA sequence Show only first row Show all	>Lus10011129 pacid=23167578 polypeptide=Lus10011129 locus=Lus10011129.g ID=Lus10011129.BGIv1.0 annot-version=v1.0 MCSNLARSQAFPFAIRFSSKSRCFPQFHHPKPSLNPTFIKYALYSLDSSFILSSTRLRVVRSFSTSQQRNVGAVRTGKSLPWLNSNSSKAKDSGKRTVSP WEKSLQSLEKVSGDTTHHDNEKEKLKRSSSSSYKKEGGKRVENNRSDRRTMRSAVDAYGRKPTSGRKNFDDYAKKDDNLEQEEPSEAAVDTPRWDKIKPR RGGLSSSNEKPEFQRWNSQDNWGRKTWKEATESSLPKIVGQGVYGVGPVLAALSAGRRELYMLYVQQGLDLSSSNARKKKDKKGFEKVLKMAEKIGLTIT DVSKHDLNMIADNRPHQGLILDASPLEMVHIKELEAVSPGEEENNSSLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLEL MELRYCKNMMQFLVLSAENGWRVIGGSVSSRAVPLDEIAPGEPTILVLGSEGTGLRPLVERSCTQLVRIPGNVPVDIAAGGESDAVDGGEETNDLHHSSK EFQSFMAVESLNVSVAAGVMLHQLIGKQTTDADIV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10011129 [exp]	0	1
AT3G25660			Amidase family protein (.1)		Lus10007361 [exp]	1.7	0.9391
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10016196 [exp]	2.8	0.9324
AT1G06190			Rho termination factor (.1.2)		Lus10024898 [exp]	5.5	0.9227
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10025473 [exp]	5.9	0.8808
AT2G19870			tRNA/rRNA methyltransferase (S...		Lus10043030 [exp]	6.0	0.9114
AT5G01590			unknown protein		Lus10012500 [exp]	6.5	0.9274
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Lus10010686 [exp]	7.0	0.9174
AT3G54090		FLN1	fructokinase-like 1 (.1)		Lus10021118 [exp]	7.1	0.9245
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10013404 [exp]	8.7	0.9001
AT5G08540			unknown protein		Lus10017363 [exp]	8.9	0.9078

Compare expression of checked genes

Lus10011129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.