Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48390 1113 / 0 ATZIP4 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043031 [exp] 1157 / 0 AT5G48390 726 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10043032 [exp] 494 / 2e-169 AT5G48390 256 / 2e-79 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G175350 [exp] 1204 / 0 AT5G48390 1254 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G143300 [exp] 47 / 9e-05 AT2G06210 1507 / 0.0 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF08631 [flax] [poplar] SPO22 Meiosis protein SPO22/ZIP4 like
Representative CDS sequence Show only first row Show all	>Lus10011130 pacid=23167538 polypeptide=Lus10011130 locus=Lus10011130.g ID=Lus10011130.BGIv1.0 annot-version=v1.0 ATGAGGATCGCCGAGATCTGCTCTCAGGATATCCCGGAGCCTAAGTTCGACTCTCCTCCACCGGACGATAATCACAACCTTCTCCTCTCACGCGTTGAAT CTCTAATCCGACGAACGGAAGAAATCTCTGCCTCCCCCACCACTCACAAGTCCGGAATTCCAGACGATCTCTCCGCCCATCTCCGCAAAACCCTAAATCA TTTCCCTCAACTCCTCCCTCTCCCCAACTCCGTCAAGCTCCAAATCTGGAAACTCAGCTATCGCCTCTGGAATGCTTGCGTTGATCTCTCCAACTCTCTT ACCATCCGACTCTCCGCTTCCTCCTCAGCAGAAATCCAAGCTAAACTCCGCCATGTCGCGGCGGATATGCTCCACCTTGCCGGCGATGTCGAAGGAGTTC CGTCTCCGGCCATCAAGTGTGCCTCCTTCTATCAGAAGACCGGCGTCATCTGGCACGATCTCGGTAAGCTCGATCTCGCTTCTGCTTGTTTGGAAACCGC GACGGAGATCCTCGCCAAAGTTGATGTTACCAAGGTATTCGACCCCTGCGAGAGAAAGCTGCTTTTGGAAGTAAACCTAGCCAGGTCGCGAGTTTCCTGG AAGCTATCCGATCGGAATCTGGCGGTGATGCTCCTTAACCGTGTCAAATCTCTGCTGTTTGGGTCTTCGGATAACTTCAAATTGCTGGCCAATCAGTACA TGGCGTTTGGCAAGGCCACGTTATCGCTTAACGACGGCAACGATTTGAGCGAAGCGCTGAAGCTGATGAACGAAGCTCTCGATCTGTGCGAGAAAGGATC AGGTGCGGCCCGGACTCGGGAACAAGCAACGCAACTCCGGGATATGAAAGTGAAAGCGCTTCGGTTTATCTCTGCCGTCCATTTACAGAAAGGCGAGTTC GAGAGCGTGATCAAATGCGTTAAGGTGTTGAGAGAAGGCGGAGGAGACAAAGCTGACCATCATGCTAGTCTCCCTGTGCTGGCAATGAAGGCCTGGTTAG GATTAGGACGGTATGAGGAAGCGGAGAAGGAGCTGAGGGGTATGGTTACGAATAAGGGAGTTCCTGAAGCTGTTTGGGTGTCAGCCATTGAGGCCTATTT TGAGTCAGCTGGTACTGCTGGGGCAGAGACTGCCAAGGCAGTGTTTATGGGGCTTCTAGATAGGTGCAATGTCAGCGCCAATGCAGCAGTCAGGTTGGCC CATAGAGTAATTGGTGATGGTGTTGGTGGGGAAGGATCAAAGGTGAGAACCCAAGTGGTCTTGGAGTTGGTTTCTGATGATAGAGTAGTGGCTCTCTTTA CCAGTCAGAAAGCCGTCAAGGAGACAGCGGCTATGCATACCATTCTTTGGAACTGTGCTGCGGATCACTTCAGAACGAAAGAGTACAAGATGAGTGCAGA GATGTTTGAAAAATCGTTGCTCTATGTTCCACATGAGATAGACAGAAGAATACTCCGAGCTAAGGGGTTTAGAGTGTTGTGTCTCTGCTACCTTGGCCTC TCTCAACTTGATAGAGCTGAAGAGTATATCACTGAGGCCAAAAAGCTTGATCCCAACATAGTTTGCGCTTTTCTCAAGCTGAAGATCTTACTACAAAAGA ACGACGAAAGCGGAGCTATTGATCAGATCCAAACGATAAGATCCTGTCTTGATTTCACTCCAGATTTTCTGTCTCTAGCAGCTCACGAGGCCATTGCTTC CCGTGCTCTCCGAGTTGCTGCTTCCTGTTTGTCAAATCTCCTGGAGTGTTACACATCAGGAAAGCCTATGCCAACAACAGAAGTGATAGTACTTCGCAGT TTAATCACAATCCTTAGCCAAAACCCTGGGAATGAGGAACAAGTCCTCAAGTACATGAAATGGGGAAACTCGAGGGCTTCCGAGTTAGGGATTGAATGCT TTTACGGGAAAAATGAGGTCGGAAGAAGAGAGCAAAATTGGTTTGCTGTCACTTGTTGGAATATGGGGATTCGATGTGGTAAGGTTAAGAAGTATGAAAT GTGTGCTGAATTTTTCAGATTGGCAACTCAATTTTGTGGAACTTCATCTGATAATGATCAAGGGGAAAACAGCTGGACGATGATGGTCTGCAAAGCTTTG ATACTAACTGTGTCTTCAGTGATAGCGTCCGAGAATCAAAAGCAGACTGCATTGTCGACTACTGATCTAAAACAAGCAGTGGAACTGCTAGATAGAGCAG GAAAGATGCTAGGTGTAATTTCAGGAGGAACCAACTTCGACCCAGACAAGGTAAAAGAAATGGAAGCAGAGATGTTGTTCATGTACACATTCAATGCCTA CCATATGCATGGAAGGCTATATGACAAAGGAAGCCAGCATCAACAACTCGAGCTAGTGAAGGCATTTGCAAGGTCAAAAGCGTGCAACCCAATGGACCTT TCCGAGATCGGAATTGCAGCATCGGAAGGTCCGTGGAGTAATCCTGAGGTAGCCATATTTGCTCTGAAAGAATCACTCTCGACCCTCCTGTCTCTCCCTT CCCCGGACTACGCTGACATCGCTGTGATGATAAGAAGACTAATAAAGGTGATGAGTAGTGTCGAGAAGAGTGATTCGGATGCAGTGCACGAAATGTACAA GCAAGCGTATAGGATAATGGTTGGGTTGAAGGAAGGGGAGTACCCCGCGGAAGAAGGGAAATGGTTGGTAACTACTGCTTGGAATAGAGCAGTGGTGCCG GTGAAGATGGGGCAAGTTGATGTGGCCAACAAGTGGATGAGCGTTGGTTTGGAGCTTGCTAGCAAGGTTCAAGGAATGGAGAGTTACAGGACATCCATGG AGGATTATGTGTCTGGGTTTTCGAAGAAGTTCCCTTTGCGGAATGCTGGTTAG
AA sequence Show only first row Show all	>Lus10011130 pacid=23167538 polypeptide=Lus10011130 locus=Lus10011130.g ID=Lus10011130.BGIv1.0 annot-version=v1.0 MRIAEICSQDIPEPKFDSPPPDDNHNLLLSRVESLIRRTEEISASPTTHKSGIPDDLSAHLRKTLNHFPQLLPLPNSVKLQIWKLSYRLWNACVDLSNSL TIRLSASSSAEIQAKLRHVAADMLHLAGDVEGVPSPAIKCASFYQKTGVIWHDLGKLDLASACLETATEILAKVDVTKVFDPCERKLLLEVNLARSRVSW KLSDRNLAVMLLNRVKSLLFGSSDNFKLLANQYMAFGKATLSLNDGNDLSEALKLMNEALDLCEKGSGAARTREQATQLRDMKVKALRFISAVHLQKGEF ESVIKCVKVLREGGGDKADHHASLPVLAMKAWLGLGRYEEAEKELRGMVTNKGVPEAVWVSAIEAYFESAGTAGAETAKAVFMGLLDRCNVSANAAVRLA HRVIGDGVGGEGSKVRTQVVLELVSDDRVVALFTSQKAVKETAAMHTILWNCAADHFRTKEYKMSAEMFEKSLLYVPHEIDRRILRAKGFRVLCLCYLGL SQLDRAEEYITEAKKLDPNIVCAFLKLKILLQKNDESGAIDQIQTIRSCLDFTPDFLSLAAHEAIASRALRVAASCLSNLLECYTSGKPMPTTEVIVLRS LITILSQNPGNEEQVLKYMKWGNSRASELGIECFYGKNEVGRREQNWFAVTCWNMGIRCGKVKKYEMCAEFFRLATQFCGTSSDNDQGENSWTMMVCKAL ILTVSSVIASENQKQTALSTTDLKQAVELLDRAGKMLGVISGGTNFDPDKVKEMEAEMLFMYTFNAYHMHGRLYDKGSQHQQLELVKAFARSKACNPMDL SEIGIAASEGPWSNPEVAIFALKESLSTLLSLPSPDYADIAVMIRRLIKVMSSVEKSDSDAVHEMYKQAYRIMVGLKEGEYPAEEGKWLVTTAWNRAVVP VKMGQVDVANKWMSVGLELASKVQGMESYRTSMEDYVSGFSKKFPLRNAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Lus10011130 [exp]	0	1
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10033148 [exp]	8.7	0.7256
AT1G09280			unknown protein		Lus10008045 [exp]	13.6	0.7731
AT2G36740		ATSWC2	sequence-specific DNA binding ...		Lus10009576 [exp]	16.5	0.7471
AT1G69400			Transducin/WD40 repeat-like su...		Lus10026051 [exp]	25.5	0.7603
AT3G12940			2-oxoglutarate (2OG) and Fe(II...		Lus10002543 [exp]	27.0	0.7134
AT5G03500			Mediator complex, subunit Med7...		Lus10029326 [exp]	29.2	0.7367
AT3G20190			Leucine-rich repeat protein ki...		Lus10033339 [exp]	31.7	0.7609
AT5G25060			RNA recognition motif (RRM)-co...		Lus10042420 [exp]	39.7	0.7572
AT5G66440			unknown protein		Lus10028329 [exp]	46.2	0.7566
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10011627 [exp]	68.9	0.7398

Compare expression of checked genes

Lus10011130 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.