Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16490 169 / 6e-48 IQD26 IQ-domain 26 (.1) AT4G29150 119 / 1e-29 IQD25 IQ-domain 25 (.1) AT1G51960 64 / 4e-11 IQD27 IQ-domain 27 (.1) AT1G01110 57 / 1e-08 IQD18 IQ-domain 18 (.1.2) AT4G00820 57 / 2e-08 IQD17 IQ-domain 17 (.1) AT5G62070 54 / 1e-07 IQD23 IQ-domain 23 (.1) AT3G51380 49 / 2e-07 IQD20 IQ-domain 20 (.1) AT4G14750 53 / 3e-07 IQD19 IQ-domain 19 (.1) AT3G22190 52 / 4e-07 IQD5 IQ-domain 5 (.1.2) AT3G52290 52 / 7e-07 IQD3 IQ-domain 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043033 [exp] 427 / 1e-147 AT3G16490 197 / 3e-59 IQ-domain 26 (.1) Lus10006613 [exp] 60 / 2e-09 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10021904 [exp] 55 / 8e-08 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10005760 [exp] 55 / 9e-08 AT5G07240 219 / 3e-67 IQ-domain 24 (.1) Lus10010104 [exp] 54 / 1e-07 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10012608 [exp] 54 / 2e-07 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10027435 [exp] 53 / 2e-07 AT5G62070 207 / 3e-62 IQ-domain 23 (.1) Lus10041419 [exp] 52 / 4e-07 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10041188 [exp] 52 / 6e-07 AT4G14750 288 / 2e-93 IQ-domain 19 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190500 [exp] 219 / 1e-66 AT3G16490 293 / 5e-96 IQ-domain 26 (.1) Potri.003G047800 [exp] 215 / 4e-65 AT3G16490 299 / 1e-98 IQ-domain 26 (.1) Potri.008G156700 [exp] 67 / 6e-12 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.010G082600 [exp] 59 / 4e-09 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.012G139800 [exp] 57 / 2e-08 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.017G079600 [exp] 54 / 1e-07 AT1G74690 225 / 2e-66 IQ-domain 31 (.1) Potri.014G104600 [exp] 53 / 2e-07 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.015G142200 [exp] 53 / 2e-07 AT5G07240 138 / 3e-36 IQ-domain 24 (.1) Potri.001G448100 [exp] 53 / 3e-07 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.005G051500 [exp] 52 / 5e-07 AT4G14750 127 / 6e-33 IQ-domain 19 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10011131 pacid=23167539 polypeptide=Lus10011131 locus=Lus10011131.g ID=Lus10011131.BGIv1.0 annot-version=v1.0 ATGTTTTTTGTCTTCTTCTCCAGATTTTCACGAGCCCTTCCCAGACCCATTACCCCCCCCCTCCCGCCCCCCCGCCCCCAGCCACCCTCGCATGCCTACT ACATCACGCTATGGTGCGGCGGATTCGGGAGGGAGTATTCCAGCGGGAGGTTGTATCCCAATCTGGATAACAACAACAACATTCCTCCACCGGAATCCGA TTGGCTCAAGTCTTATTACCACGACGAGAAAGAGCAGAACAAGCACGCTATTGCGGTTGCTGCTGCCACTGCCGCAGCCGCGGATGCCGCCGTTGCTGCT GCTCAGGCTGCCGTCGCCGTCGTCAGACTCACTAGCCATGGCGGCAGAATGTTTAGCAGCCGCCAGACCCTTGCTGCCGTCAAGATTCAGTCGGTTTTCA GAGGTTACTTGGCGAGAAAGGCGTTGCGAGCTCTGAAAGGATTGGTGAAAATACAAGCGCACTTCAGAGGTTATTTAGTGAGGAAGCAAGCCAATCAGAC TCTTCACAGTATGAAAACGTTGATCAGGGCACAATCCGCCGCTCACTCCCAAAGAGCTCGTCGGAGCCGAATGGAACTCCGAGCACGGAAATCCTTGGAG AGATTTGACGAGATTAGAAGTGGTCATCATCATCACCCTACTACAGCTTCAGTCCACCACAGTCGCCGGCTCTCCGCTTCTCTCGATACCGCTTCATTAA TTGATGCCGCCAGCAATCTAATTGACGATACGCCCAAGATTGTGGAGATGGATACAGGGAGCAGCAGCAGGCACAGGTCCAGATCTGGACGATGTACAAC AGTTTCCGAATTCGGCCATGATCCAGCGCCGCCGCCTCCGTCGAGAAATACTCCCCGACAGTCGACTCTAGACGGCCCCCCAGCATCGAGAAATCCTCCC CGGCTGTCGATTCCGGACTGCCCCCAGCCTTTGGATTGGGGGGTCGCCGGCGACGAGTGCGGATTCTACACGGCGCACAGCACTCCCAGGTTTCTGACGC CGGTGACGCCAGCGAAGAGCATCTGCGGCGGGGAGAATTTCTTCCGGTCTCCGTACTACGGTAGGCCCGTCCCGAGCTACATGGCGAATACGCAGTCGTT TAGGGCGAAGTTGAGGTCGTACAGTGCGCCGAGGCAGAGGCCGGAGTCGGGAACGCCGGGGAGGAAGAGGGCATCGCTGAATGAGCTGATGGAGTCGAGG AACAGCTTGAGCGGGGTGAGGATGGAGAGGTCGTGTTCCCAAGCTCAGGAAGCCGCCGCCATTAATTTGAAAAATGCGGCGGTGATGGGTAAGCTTGATG GGTCGCCGGGTTTTCGAAGGGAAAAGGAGATGTTCGACTTGGAGACGAGATGGTAA
AA sequence Show only first row Show all	>Lus10011131 pacid=23167539 polypeptide=Lus10011131 locus=Lus10011131.g ID=Lus10011131.BGIv1.0 annot-version=v1.0 MFFVFFSRFSRALPRPITPPLPPPRPQPPSHAYYITLWCGGFGREYSSGRLYPNLDNNNNIPPPESDWLKSYYHDEKEQNKHAIAVAAATAAAADAAVAA AQAAVAVVRLTSHGGRMFSSRQTLAAVKIQSVFRGYLARKALRALKGLVKIQAHFRGYLVRKQANQTLHSMKTLIRAQSAAHSQRARRSRMELRARKSLE RFDEIRSGHHHHPTTASVHHSRRLSASLDTASLIDAASNLIDDTPKIVEMDTGSSSRHRSRSGRCTTVSEFGHDPAPPPPSRNTPRQSTLDGPPASRNPP RLSIPDCPQPLDWGVAGDECGFYTAHSTPRFLTPVTPAKSICGGENFFRSPYYGRPVPSYMANTQSFRAKLRSYSAPRQRPESGTPGRKRASLNELMESR NSLSGVRMERSCSQAQEAAAINLKNAAVMGKLDGSPGFRREKEMFDLETRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16490		IQD26	IQ-domain 26 (.1)		Lus10011131 [exp]	0	1
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10002857 [exp]	7.1	0.9331
AT3G56370			Leucine-rich repeat protein ki...		Lus10025223 [exp]	8.2	0.9300
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Lus10004959 [exp]	10.9	0.9239
AT3G27120			P-loop containing nucleoside t...		Lus10041563 [exp]	11.4	0.9083
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10043134 [exp]	13.9	0.9283
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009052 [exp]	14.7	0.9247
AT1G03470			Kinase interacting (KIP1-like)...		Lus10040904 [exp]	19.1	0.9248
AT5G37630		EMB2656	EMBRYO DEFECTIVE 2656, ARM rep...		Lus10020813 [exp]	19.5	0.9265
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Lus10009683 [exp]	20.0	0.9227
AT3G25100		CDC45	cell division cycle 45 (.1)		Lus10022775 [exp]	21.0	0.9226

Compare expression of checked genes

Lus10011131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.