Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19730 572 / 0 Pectin lyase-like superfamily protein (.1) AT2G36710 287 / 7e-94 Pectin lyase-like superfamily protein (.1) AT1G05310 281 / 9e-92 Pectin lyase-like superfamily protein (.1) AT5G47500 271 / 2e-88 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT3G29090 268 / 8e-88 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) AT2G36700 261 / 7e-85 Pectin lyase-like superfamily protein (.1) AT5G55590 254 / 1e-81 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT2G21610 253 / 2e-81 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT5G07430 249 / 8e-80 Pectin lyase-like superfamily protein (.1) AT1G69940 244 / 1e-77 ATPPME1 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043035 [exp] 675 / 0 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10012942 [exp] 592 / 0 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 426 / 9e-149 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 421 / 9e-148 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 288 / 5e-95 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 284 / 4e-93 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10010470 [exp] 282 / 8e-92 AT1G05310 521 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027737 [exp] 275 / 4e-89 AT2G36710 427 / 2e-148 Pectin lyase-like superfamily protein (.1) Lus10041699 [exp] 270 / 3e-88 AT3G29090 527 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G068400 [exp] 593 / 0 AT5G19730 603 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.007G015700 [exp] 466 / 4e-165 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 296 / 7e-98 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.016G017700 [exp] 289 / 6e-95 AT1G05310 511 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 283 / 7e-93 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 278 / 2e-90 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.004G128820 [exp] 271 / 9e-89 AT3G29090 562 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.004G156300 [exp] 264 / 8e-86 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.001G365700 [exp] 264 / 1e-84 AT5G55590 429 / 1e-149 QUARTET 1, Pectin lyase-like superfamily protein (.1) Potri.006G137100 [exp] 262 / 1e-84 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Lus10011132 pacid=23167551 polypeptide=Lus10011132 locus=Lus10011132.g ID=Lus10011132.BGIv1.0 annot-version=v1.0 ATGCCACAGTTATTAACCAGTTCCATTTCCCTCCTGATCATAATCCTCCTGCTGCTGCTGCTGCTCACTTCACCCCAAACTACATTCTGCCACGCCAAGG GATTCAACCCCAGGGACTCATCATTGGGACAAAACAATCTGACAGCCGCAAGAGCCCAACTGTCGGAACAGCAATTCATGAAGTGGGTCGAATTCGTTGG CACCTTGAAGCACTCCATCTTCAAGGTAGCCAAGAACAAGCTCTTCCCTTCTTTCACCCTCACCGTCGACAAGAACCCGGCCGCAGGGGACTTCACCTCC ATCCAGAAGGCCATTGATTCCCTCCCTTTCATCAACATTGTCAGAGTCGTCATCAAGGTCCATGCTGGAGTTTACACGGAGAAGGTAAGCATACCAGCAC TGAAGTCATTCATAACGATACAAGGTGCCGGAGCCGAGACTACAATTGTACAATGGGGAGACACCGCTGAAACCCCTTCCCCTTCCAATCACAAGCCTAT GGGAACCTACGGTTCCGCCACCTTCGCCGTCAACTCACCTTTCTTCGTCGCCAAATACATCACTTTCAAGAACACGTCCCCTGTTCCGCCCCCCGGAGCG GCAGGGAAGCAGGCGGTTGCGTTGAGGATATCGGCCGACACTGCGGCCTTCGTGGGCTGCAGGTTCCTGGGCGGACAGGACACTCTGTACGACCATTTCG GGAGGCATTACTACAAAGGTTGTTACATTGAAGGATCTGTGGATTTCATCTTCGGCAACGGCCTCTCCTACTTTGAGGGGTGTCACGTGCATGCAATAGC GGAGTACACGGGGGCACTAACTGCGCAAGGAAGGAGTAGCTTGTTGCAGGACACTGGGTTTTCGTTTGTGAAATGCAGAGTGACTGGTTCAGGAGGAGCT CTGTTTCTGGGAAGAGCATGGGGTCCTTTCTCCAGAGTTGTGTTTGCTTACACTTACATGGACGATTTCATCCTCCCCAAAGGCTGGTACAACTGGGGCG ACCCTATCCGCGAATTGACGGTATTTTATGGGCAATACAAGTGTACAGGAGCAGGGGCTAGATTTGGCGGAAGAGTGGCTTGGTCCAGAGAGCTCAGTGA CGATGAAGCTAAGCCTTTCCTTTCTCTTAGCTTCATTGATGGTTCTGAATGGATTCAACTCTAA
AA sequence Show only first row Show all	>Lus10011132 pacid=23167551 polypeptide=Lus10011132 locus=Lus10011132.g ID=Lus10011132.BGIv1.0 annot-version=v1.0 MPQLLTSSISLLIIILLLLLLLTSPQTTFCHAKGFNPRDSSLGQNNLTAARAQLSEQQFMKWVEFVGTLKHSIFKVAKNKLFPSFTLTVDKNPAAGDFTS IQKAIDSLPFINIVRVVIKVHAGVYTEKVSIPALKSFITIQGAGAETTIVQWGDTAETPSPSNHKPMGTYGSATFAVNSPFFVAKYITFKNTSPVPPPGA AGKQAVALRISADTAAFVGCRFLGGQDTLYDHFGRHYYKGCYIEGSVDFIFGNGLSYFEGCHVHAIAEYTGALTAQGRSSLLQDTGFSFVKCRVTGSGGA LFLGRAWGPFSRVVFAYTYMDDFILPKGWYNWGDPIRELTVFYGQYKCTGAGARFGGRVAWSRELSDDEAKPFLSLSFIDGSEWIQL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19730			Pectin lyase-like superfamily ...		Lus10011132 [exp]	0	1
AT1G44760			Adenine nucleotide alpha hydro...		Lus10042701 [exp]	7.5	0.9523
AT3G58690			Protein kinase superfamily pro...		Lus10017647 [exp]	7.9	0.9442
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10017292 [exp]	8.7	0.9514
AT4G01290			unknown protein		Lus10039283 [exp]	14.0	0.9471
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10028754 [exp]	15.5	0.9470
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10030473 [exp]	17.0	0.9441
AT2G45480	GRF	ATGRF9	growth-regulating factor 9 (.1...		Lus10038002 [exp]	17.8	0.9471
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Lus10001540 [exp]	20.0	0.9448
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10016809 [exp]	21.2	0.9427
AT1G10640			Pectin lyase-like superfamily ...		Lus10030886 [exp]	23.1	0.9390

Compare expression of checked genes

Lus10011132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.