Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19740 782 / 0 Peptidase M28 family protein (.1) AT3G54720 454 / 3e-151 MFO1, HPT, COP2, AMP1 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1) AT4G07670 307 / 5e-100 protease-associated (PA) domain-containing protein (.1), protease-associated (PA) domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043036 [exp] 1128 / 0 AT5G19740 745 / 0.0 Peptidase M28 family protein (.1) Lus10021090 [exp] 392 / 8e-129 AT3G54720 628 / 0.0 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1) Lus10017223 [exp] 386 / 6e-127 AT3G54720 630 / 0.0 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G153300 [exp] 853 / 0 AT5G19740 877 / 0.0 Peptidase M28 family protein (.1) Potri.016G064300 [exp] 501 / 1e-169 AT3G54720 803 / 0.0 PRIMORDIA TIMING, Multifolia, HAUPTLING, CONSTITUTIVE MORPHOGENESIS 2, ALTERED MERISTEM PROGRAM 1, Peptidase M28 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04253 [flax] [poplar] TFR_dimer Transferrin receptor-like dimerisation domain CL0035 [flax] [poplar] Peptidase_MH PF04389 [flax] [poplar] Peptidase_M28 Peptidase family M28 CL0364 [flax] [poplar] Leu-IlvD PF02225 [flax] [poplar] PA PA domain
Representative CDS sequence Show only first row Show all	>Lus10011133 pacid=23167519 polypeptide=Lus10011133 locus=Lus10011133.g ID=Lus10011133.BGIv1.0 annot-version=v1.0 ATGTTGAAATCAGCTATCTATGCCTTCCTCAACTTAGCAACCTCCCTAACCTTACTCGTCTTCTCCACCACTACCCCTTCTCCAAAATCACACTACCACT CTCTCTTCCTATCCACCTCCTTCTCCGACAACGCCTCCATTTCCCACAACCTCTACACCCTCACCCGCCACCCTCACGTCGCCGGCACCCAAGCCAACGC CGACACCGCCCGCTACGTCCTCTCAACTCTCACAACCTCATCCATCAAATCCCATCTAGCCTCCTACGACGTCGCCCTCACCTACCCTGCTTCCCGCTCC TTAACTCTCCATCATCATGGCCACTACCACGCATTGGATCTCCGTCAGCAAAAGTACGACGGCGAATCACCCTACGCCGACGATGTCCTCCCGACTTTCC ACGGATACGGCAAGTCGGGGAACGTCAGCGGACGTGTCACCTACGTCAACTACGGGCGTGTGGAGGACTACAAAAGGTTGAAGGAGATGGGAGTCAACGT TTCCGGGACCATCGTGTTGGCAAAGTATGGACAGATTTACAGAGGTGATATTGTGGACAATGCTTACGTGGAGGGCGCTGTAGGGACGATCATATACTCT GATAGGATAGACTTCGGTGGTGGCGGTGGTGGTGATTGGTTCCCGGATTCTAAGTGGCTGCCGCCGAGTGGGGTGCAGGTTGGTTCCGTGTATAGTGATG CTGGTGATCCTACCACCCCTGGATGGCCGAGTAGTGAGGGTTGTGAGAGGATTGGTTATGATCAAGTGGAGAAGTCTGGAGTGGTTCCCATGATTCCATC GTTGCCGGTGTCGGGTGTTGACGGGGAGGTGATTATCAAGTCGATTGGTGGGGAGGTGGCTGATGATGATTGGCAAGGGAGTGAGGATGCTCCTGTTTAC AGGGTTGGACCAGGTCCAGGTGTTCTTCATCTCAACTATACTGTAGACCTGCAGGCAACTAAGACGATGGCTACGATCCATAATGTTATTGGGATCATCG AAGGAGCAGAAGAACCTGATCGCTTGGTCCTCCTGGGAAATCATCGGGACGCATGGACGTTTGGTGCAGCTGATCCCAACAGTGGAACTGCAGCACTGCT TGAGATCGCTCAGAGACTAGGAAAGCTTCAGAAGAAAGGCTGGAAACCTCGAAGAACAATTGTCTTTTGCAGTTGGGATGCTGAGGAGTACGGCCTGATA GGATCAACTGAGTGGGTTGAAGACAACAGACAAGTTTTGACATCCAAGGCAGTGGCTTACTTGAATGTGGATATAGCAGTATGTGATGATGGGTATTCTG CTGCTGCAACTCCTCAACTTGATCAACTCCTCATAGAGGCTGCTAAACAGGTTGATGATCCGAAAAACTCATCAAGGAGCGTCTACGATTCATGGACTGG CTCCAGTATTTCTCCCCAGATTGGAAGGTTAGGGGGCGGAGGATCCGATTATGCAGCCTTTGTACAGCATATTGGTGTTGCATCAGTTGACATGTCTTAC GGAGATGGATACCCTGTATACCACTCAATGTATGATGACTTTGTCTGGATGAGCAACTTTGGAGACCCCATGTTCCACAAACATGTTGCAGTTGCAAGCA TTTGGGGATATCTGGCTCTCCGACTAGCAGACGATGAAATTTTGCCGTTCAATTATATACCTTATGCTGAAGAGCTCGAGAAAAGTGCAAAGGAGTTGGA AGATGTGGTATCAAGTAAGATAACTGTCGTTCCCTTGCTCAAGTCTATCGGCACACTAACAAAAGCAGCAACCAAAGTGAACAATGAGATAAAGATATAT GGACCTGCGAAGCATAATGACTATGGTTCCAAGTCCTTCCCAGGTGTAGATGATACAATAGAACAAGCAAAGAGTCTAAACACTGCAGAATCATGGCAGT TAGTGCAGCATGAAGTTTGGCGGGTTGCCAGAGCCATTAATCAAGTGGCGAAGGTCCTCAGTGGTGAACTGACATGA
AA sequence Show only first row Show all	>Lus10011133 pacid=23167519 polypeptide=Lus10011133 locus=Lus10011133.g ID=Lus10011133.BGIv1.0 annot-version=v1.0 MLKSAIYAFLNLATSLTLLVFSTTTPSPKSHYHSLFLSTSFSDNASISHNLYTLTRHPHVAGTQANADTARYVLSTLTTSSIKSHLASYDVALTYPASRS LTLHHHGHYHALDLRQQKYDGESPYADDVLPTFHGYGKSGNVSGRVTYVNYGRVEDYKRLKEMGVNVSGTIVLAKYGQIYRGDIVDNAYVEGAVGTIIYS DRIDFGGGGGGDWFPDSKWLPPSGVQVGSVYSDAGDPTTPGWPSSEGCERIGYDQVEKSGVVPMIPSLPVSGVDGEVIIKSIGGEVADDDWQGSEDAPVY RVGPGPGVLHLNYTVDLQATKTMATIHNVIGIIEGAEEPDRLVLLGNHRDAWTFGAADPNSGTAALLEIAQRLGKLQKKGWKPRRTIVFCSWDAEEYGLI GSTEWVEDNRQVLTSKAVAYLNVDIAVCDDGYSAAATPQLDQLLIEAAKQVDDPKNSSRSVYDSWTGSSISPQIGRLGGGGSDYAAFVQHIGVASVDMSY GDGYPVYHSMYDDFVWMSNFGDPMFHKHVAVASIWGYLALRLADDEILPFNYIPYAEELEKSAKELEDVVSSKITVVPLLKSIGTLTKAATKVNNEIKIY GPAKHNDYGSKSFPGVDDTIEQAKSLNTAESWQLVQHEVWRVARAINQVAKVLSGELT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19740			Peptidase M28 family protein (...		Lus10011133 [exp]	0	1
AT3G58670			Protein of unknown function (D...		Lus10017645 [exp]	4.2	0.8252
AT3G03490		AtPEX19-1, PEX1...	peroxin 19-1 (.1)		Lus10010463 [exp]	8.1	0.8014
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Lus10008098 [exp]	9.7	0.7591
AT1G69510			cAMP-regulated phosphoprotein ...		Lus10030448 [exp]	10.4	0.8032
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10034135 [exp]	10.7	0.7903
AT5G63380			AMP-dependent synthetase and l...		Lus10022335 [exp]	12.0	0.7922
AT1G64970		VTE4, TMT1, G-T...	VITAMIN E DEFICIENT 4, gamma-t...		Lus10009537 [exp]	12.5	0.8126
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10022336 [exp]	13.5	0.8284
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Lus10028642 [exp]	13.6	0.7541
AT5G09630			LisH/CRA/RING-U-box domains-co...		Lus10007106 [exp]	13.7	0.8065

Compare expression of checked genes

Lus10011133 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.