Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29380 1549 / 0 AtVPS15 Arabidopsis thaliana vacuolar protein sorting 15, protein kinase family protein / WD-40 repeat family protein (.1) AT2G43770 48 / 3e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT4G34460 45 / 0.0002 ELK4, AGB1, ATAGB1 ERECTA-LIKE 4, GTP binding protein beta 1 (.1.2.3.4) AT3G49660 44 / 0.0007 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G18080 44 / 0.0008 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043037 [exp] 2252 / 0 AT4G29380 1926 / 0.0 Arabidopsis thaliana vacuolar protein sorting 15, protein kinase family protein / WD-40 repeat family protein (.1) Lus10026094 [exp] 48 / 4e-05 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10012230 [exp] 47 / 6e-05 AT2G43770 620 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10043473 [exp] 48 / 8e-05 AT1G15440 1058 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) Lus10039636 [exp] 47 / 9e-05 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 45 / 0.0002 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10034114 [exp] 44 / 0.0009 AT1G15440 1318 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G153100 [exp] 1896 / 0 AT4G29380 2099 / 0.0 Arabidopsis thaliana vacuolar protein sorting 15, protein kinase family protein / WD-40 repeat family protein (.1) Potri.019G096900 [exp] 46 / 0.0001 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 44 / 0.0006 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G173500 [exp] 44 / 0.001 AT1G15440 1342 / 0.0 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10011134 pacid=23167577 polypeptide=Lus10011134 locus=Lus10011134.g ID=Lus10011134.BGIv1.0 annot-version=v1.0 ATGTTGTATGTTACCGTTAGGTGTGTAATTGCAGAGCTTTTCCTTGAAGGCCAGCAATTATTTGAACTCTCTCAGCTTCTTGCTTACCGCAGAGGACAAT ATGATCCTAGCCAACATCTTGAAAAGATTCCGGATGCTGGAATCCGCAAGATGATACTTCATATGATTCAGTTGGAACCTGAGGCTCGCCTTTCTGCTGA GAGCTACTTGCAAAATTATGCAGCTGTAGTATTTCCAAGTTATTTCTCTCCATTTTTGCATAATTTCTACTGCTGCTGGAATCCTCTTCATTCTGATATG AGAGTTGCAATGTGCCAGAGTGTCTTTGATGAGATACTGAAGCAAATGGTTGGTCCCCGGACATATGAGATGATGGGGAGTGAAAGTAGCATGCCTGCAA ATGACACGAGTTCTGAATCTACGAAAGAGATGACTGAGAAACAAAATCTGGGATCGGCAAGTCTCCCAAGGGGTGAGGAAAATGCAGAGAAGGGATTGGT TCATGAGAACTACAAACTTCTTGGTGATATCAATAATTTGCTTGGGGATGTAGACCAGCACAGTGATGGTGGCATGAAGGTCATTGCTACCAGTGAACAA GCAGACTCTTCTTTCTCCCAAGGTCTCAAGCAATGTGGTCTACAATCTCCTTGTGAACTTCTACAGGCTATATCCAGTGCATTTAGGAAAAATGATCACC CCTTTCTCAAGAAGATCACAGTTGATGATTTGAGTTCCTTGATGTCGGAGTATGACTGTCGATCAGATACCTTTGGGATGCCCTTTTTACCTTTACCTGA AGATAGTATGAGGTGTGAAGGTATGGTTCTGATAGCTTCCCTTCTTTGTTCCTGCATACGCAATGTCAAGTTACCCCATTTGAGGCGGGGGGCCATACTT TTATTGAAGTCCTCTTCATTGTACATTGATGATGAGGATCGGTTGCAGCGTGTTCTACCATATGTCATTGTTATGCTGTCGGATCCGGTGGCAATTGTCC GTTGTGCTGCTTTAGAAACTTTGTGCGACATTCTACCTTTAGTTCGCGAGTTTCCTCCTAGTGATGCCAAAATTTTTCCTGAATATATTCTTCCAATGCT TTCCATGCTTCCTGATGACCCTGAAGAAAGTGTTAGAATATGTTATGCTAGCAATATAGCCAAGCTCGCTCTTACTGCTTATGGATTTTTGGTTCATTCA ATGAGCTTGACTGAGGCTGGTGTTCTTGATGAGTTGAGCCTGCCCCTGATGTCTTTGCAATCAACTTGTGAGGTTGCTGGAAGGCTTCAGACTTCAAATA ATGATGCTCAGCTTGCCCAATTGAGGAGATCCATTGCTGAAGTTGTCCAAGAACTTGTAATGGGCCCGAAGCAAACTCCTAATATCAGGAGAGCACTACT TCAGGACATTGGCAACTTGTGCTGTTTCTTTGGCCAAAGACAGAGCAATGACTTTCTGTTGCCCATCCTTCCTGCCTTTCTTAATGACCAGGATGAGCAA CTAAGGGCACTATTCTATGGAAAGATTGTGTATGTTTGCTTCTTTGTAGGTCAGACAAGTGTGGAAGAATATCTTTTACCATACATTGAACAGGCTTTAA CAGATCAAACGGAGGCTGTTATCTTTAATGCATTAGATTGCTTAGCAGTCCTGTGTAAACGTGGTTTCTTGCGGAAGCGTATACTGCTTGAAATGATTGA ACGTGCTTTTCCATTGCTGTGTTATCCTAGCCAATGGGTCAGAAGGTCAGTTGTAAGCTTCATTGCAGCCAGCAGTGAGAATTTAGGTGCAGTTGATTCA TATGTATTCCTTGCCCCTGTCATTCGTCCTTTCCTCCGCAGGCAACCGGCTTCTCTAGCTTCAGAGAATTCTCTCTTTTCATGTCTAAAGCCTCCTGTAT GTCGCCAAACATTTTATCAGATCTTGGAAAATGCCAGGAGTTCAGACATGTTGGAAAGACAGCGGAAAATTTGGTATAATTCATCTGCTCAATCAAAACA AGGGGAAACCATTGAGATGCTTACGCAGCCGAATGGAGAGATAAAATCAATTAGACATTGGACAGACAGAAAACAGAGTCAAGATGATAAGAAACTCAAC CTAAATGGAGCGTATGAGCTAGAGAATTCTCAGACAAGGTTGAGAGCTTCTGGCATTACAGACAATTTTTCTGCCATGGGCAACATCCCTGATCACATAT GCTCAGAGAAGCTGCAATTCTCTGGGTATTTATCAGCACATGTCAGTGGTGTGAATAGTCTGATTCATGATAAGTCCTCACAAGATTTCCCTGTCTATTG CTTTGGAATGGACAGGAGAGCAGTGAAACTGCCTTCTGCAGCCTCTGATTCTTCATTACGAATGACTACCCTTGAAATCAATTCATCATACATGCCTTGG ATGGATCCGACAAACAAATCTCTGCACTTGGCTAGTTCTGTTCCTACACCAAAGCTGCTATCTAGCTCATTCTGTATTGCTGGTGGCCCGAAACAGTTTT ATAGAGTGGTGCATGAACCAATAGTGTGGTGCATGAACCAAAAAGTAGGGAAAATGATCAGACGGCTTATGTCAGTAGTAAATACCGAGACACTGGATTA TCTAACACGACAAAAGGGAACACTTTTACAGTTGATGATGCAGCTATGGCAAGTGATGCATCAGGATTGCCATCTTTCGTGCGGGCTACCTCAGTTCCAG ATTCAGGAGCATCGTTCTGCTGTCAATGACCTTGCAATTTCAAATGATCAAACTCTTTTTGTGAGTGCATCTGATGATTCAACTGTCAAGATTTGGGATA CAAGAAAGTTGGAAAAAGACATATCATTCAGATCAAGGTTGAGTTATCATCTTGAGGGAAGCCGAGGACTTTGTTCTGTAATGCTTCGGAACTCTGCTAA AGTGGTTGTTGGAGCATGTGATGGAGTGCTTCATGTATTTTCTGTGGATCACATATCCAGAGGCCTTGGCAATGTTGTTGAGAAATACTCGGGTATTACA GATATAAAAAAGAAGGATACTAAGGAAGGTGCCATCCTTAGCCTTCTGAACTACACTGATAATAGTGACAGCCAGATTGTTATGTTCAGTACTCGGAATT ATGGGATCCATATGTGGGATCTAAGGGAAACTCGAAGTGCGTGGACACTAAAGGCGGCCCCAGAGGAAGGATATGTGTCTTCACTGGTAACAGGACCTTG TGGAAACTGGTTTGTGTCAGGATCTTCTAGGGGTGTGCTTACTCTATGGGATCTAAGGTTCCTTGTTCCTGTTAACTCATGGCGGTATTCTCTTGCCTGT CCTGTGGAGAAGATGAGCTTGTTTATTCCTCCCTCAAATGTTTCTGTGTCATCTACTGCACGGCCACTGGTGTATGTTGCTGCAGGTTGCAATGAAGTTT CTCTTTGGAATGCTGAGAATGGGAGTTGTCACCAGGTATTTCGGATGGCAAGTTATGAAGGTGATCCTGAAACTTCTGATGTACCATCAGCATTAGCCAA ACCTTCCAGTAAGGCAATATCCAAATCTGATAGGCGTAATGTCAACCCAAAATATCGGGTTGATGAACTGAATGAACCTCCTCCTCGTCTTCCGGGTATC CGTTCGATGCTTCCCTTACCTGGTGGCGATTTGTTGACCGGGAGTACTGACTTAAGGATACGTAGATGGGACCATTGCAGCCCAGAGAAAAGTTACTGCA TTTCTGGACCTAACTTAAATGGAACTGGAAACGAGAATTTGTACGAAGCAAGGCCATTTTCTGGGGTGCAAGTTGTCCAGGAGATTAGAAGACGACCTTC GACAACACAGTTCACCACAAAGGCAGTTCTTGCAGCTGCTGCTACAGACTCTGCCGGTTGCCATAGGGATTCTGTCCTGTCTTTGGCCACTGTAAAGTTG AACCAAAGGCTTCTTATTTCAAGTGGTAGAGATGGAGCTATCAAGGTTTGGAAGTAA
AA sequence Show only first row Show all	>Lus10011134 pacid=23167577 polypeptide=Lus10011134 locus=Lus10011134.g ID=Lus10011134.BGIv1.0 annot-version=v1.0 MLYVTVRCVIAELFLEGQQLFELSQLLAYRRGQYDPSQHLEKIPDAGIRKMILHMIQLEPEARLSAESYLQNYAAVVFPSYFSPFLHNFYCCWNPLHSDM RVAMCQSVFDEILKQMVGPRTYEMMGSESSMPANDTSSESTKEMTEKQNLGSASLPRGEENAEKGLVHENYKLLGDINNLLGDVDQHSDGGMKVIATSEQ ADSSFSQGLKQCGLQSPCELLQAISSAFRKNDHPFLKKITVDDLSSLMSEYDCRSDTFGMPFLPLPEDSMRCEGMVLIASLLCSCIRNVKLPHLRRGAIL LLKSSSLYIDDEDRLQRVLPYVIVMLSDPVAIVRCAALETLCDILPLVREFPPSDAKIFPEYILPMLSMLPDDPEESVRICYASNIAKLALTAYGFLVHS MSLTEAGVLDELSLPLMSLQSTCEVAGRLQTSNNDAQLAQLRRSIAEVVQELVMGPKQTPNIRRALLQDIGNLCCFFGQRQSNDFLLPILPAFLNDQDEQ LRALFYGKIVYVCFFVGQTSVEEYLLPYIEQALTDQTEAVIFNALDCLAVLCKRGFLRKRILLEMIERAFPLLCYPSQWVRRSVVSFIAASSENLGAVDS YVFLAPVIRPFLRRQPASLASENSLFSCLKPPVCRQTFYQILENARSSDMLERQRKIWYNSSAQSKQGETIEMLTQPNGEIKSIRHWTDRKQSQDDKKLN LNGAYELENSQTRLRASGITDNFSAMGNIPDHICSEKLQFSGYLSAHVSGVNSLIHDKSSQDFPVYCFGMDRRAVKLPSAASDSSLRMTTLEINSSYMPW MDPTNKSLHLASSVPTPKLLSSSFCIAGGPKQFYRVVHEPIVWCMNQKVGKMIRRLMSVVNTETLDYLTRQKGTLLQLMMQLWQVMHQDCHLSCGLPQFQ IQEHRSAVNDLAISNDQTLFVSASDDSTVKIWDTRKLEKDISFRSRLSYHLEGSRGLCSVMLRNSAKVVVGACDGVLHVFSVDHISRGLGNVVEKYSGIT DIKKKDTKEGAILSLLNYTDNSDSQIVMFSTRNYGIHMWDLRETRSAWTLKAAPEEGYVSSLVTGPCGNWFVSGSSRGVLTLWDLRFLVPVNSWRYSLAC PVEKMSLFIPPSNVSVSSTARPLVYVAAGCNEVSLWNAENGSCHQVFRMASYEGDPETSDVPSALAKPSSKAISKSDRRNVNPKYRVDELNEPPPRLPGI RSMLPLPGGDLLTGSTDLRIRRWDHCSPEKSYCISGPNLNGTGNENLYEARPFSGVQVVQEIRRRPSTTQFTTKAVLAAAATDSAGCHRDSVLSLATVKL NQRLLISSGRDGAIKVWK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011134 [exp]	0	1
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10043037 [exp]	1.0	0.9892
AT5G42940			RING/U-box superfamily protein...		Lus10018725 [exp]	2.2	0.9134
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10014310 [exp]	2.4	0.9002
AT3G19190		ATATG2	autophagy 2 (.1)		Lus10019868 [exp]	3.2	0.9339
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10038127 [exp]	4.0	0.9171
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Lus10001717 [exp]	4.9	0.9268
AT4G08540			DNA-directed RNA polymerase II...		Lus10020601 [exp]	5.5	0.8800
AT5G15400			U-box domain-containing protei...		Lus10030697 [exp]	6.9	0.8985
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	9.2	0.8995
AT2G19710			Regulator of Vps4 activity in ...		Lus10000978 [exp]	10.0	0.8742

Compare expression of checked genes

Lus10011134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.