Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29380 406 / 4e-132 AtVPS15 Arabidopsis thaliana vacuolar protein sorting 15, protein kinase family protein / WD-40 repeat family protein (.1) AT5G08590 54 / 3e-08 ASK2, SNRK2-1, SNRK2.1, SRK2G ARABIDOPSIS SKP1-LIKE1, ARABIDOPSIS SERINE/THREONINE KINASE 2, SNF1-related protein kinase 2.1 (.1) AT1G33770 54 / 4e-08 Protein kinase superfamily protein (.1) AT5G04510 54 / 4e-08 ATPDK1, PDK1 3'-phosphoinositide-dependent protein kinase 1 (.1.2) AT3G08730 52 / 1e-07 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT5G01810 52 / 1e-07 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3) AT1G30640 52 / 1e-07 Protein kinase family protein (.1) AT4G10010 52 / 2e-07 Protein kinase superfamily protein (.1) AT1G12680 51 / 2e-07 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT3G10540 51 / 2e-07 3-phosphoinositide-dependent protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043037 [exp] 457 / 4e-151 AT4G29380 1926 / 0.0 Arabidopsis thaliana vacuolar protein sorting 15, protein kinase family protein / WD-40 repeat family protein (.1) Lus10031651 [exp] 57 / 6e-09 AT1G53050 645 / 0.0 Protein kinase superfamily protein (.1) Lus10033684 [exp] 56 / 7e-09 AT1G53050 668 / 0.0 Protein kinase superfamily protein (.1) Lus10009464 [exp] 56 / 1e-08 AT1G71530 652 / 0.0 Protein kinase superfamily protein (.1.2) Lus10001285 [exp] 56 / 1e-08 AT1G71530 648 / 0.0 Protein kinase superfamily protein (.1.2) Lus10039836 [exp] 54 / 3e-08 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10038647 [exp] 54 / 4e-08 AT3G10540 813 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10017448 [exp] 53 / 9e-08 AT3G10540 821 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10005228 [exp] 53 / 9e-08 AT5G39420 537 / 0.0 CDC2C (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G153100 [exp] 410 / 2e-133 AT4G29380 2099 / 0.0 Arabidopsis thaliana vacuolar protein sorting 15, protein kinase family protein / WD-40 repeat family protein (.1) Potri.013G130000 [exp] 60 / 4e-10 AT1G53050 690 / 0.0 Protein kinase superfamily protein (.1) Potri.010G071400 [exp] 59 / 5e-10 AT1G08650 298 / 1e-101 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.010G002500 [exp] 58 / 1e-09 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Potri.008G166500 [exp] 56 / 3e-09 AT1G08650 287 / 2e-97 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.006G171400 [exp] 54 / 2e-08 AT5G57630 549 / 0.0 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1) Potri.006G080500 [exp] 52 / 8e-08 AT2G45490 470 / 2e-169 ataurora3 (.1) Potri.005G251500 [exp] 51 / 2e-07 AT1G12680 662 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.007G112400 [exp] 51 / 2e-07 AT1G12680 492 / 4e-172 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.003G003700 [exp] 51 / 3e-07 AT1G09600 703 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10011135 pacid=23167548 polypeptide=Lus10011135 locus=Lus10011135.g ID=Lus10011135.BGIv1.0 annot-version=v1.0 ATGGGGAACAAGATCGCGCGCACGACGCAGGTCTCCGCCTCCGAGTACTACCTCCACGATTTGCCTTCTTCTTACAATTTGGTTCTTAAGGAGATCCTCG GCCGCGGCAGATTCTTCAAGACCGTTCTCTGCAAGCACGACGAAGGTTTGGTCCTCGTCAAGGTCTATTTCAAGCGCGGCGACTCCATCGACCTCAGGGA ATACGAGCGTCATCTCTCCTTCATCAAGGATACCTTCCGCTCCATTGATCATCCTCACGTCTGGCCTTTCCAGTTCTGGCAAGAGACTGATAAGGCAGCC TATCTTCTAAGACAATATTTCTTCAACAATCTGCATGATCGACTGAGTACTCGGCCATTTCTCAATCCCGTAGAGAAAAAATGGTTGGCATATCAGTTAC TTCTTGCTGTAAAACAGTGCCACGAAAACGGTATATGTCATGGTGATATCAAGTGCGAGAATGTCTTGGTGACATCTTGGAATTGGCTGTATCTTGCTGA TTTTGCTTCGTTCAAACCAACTTACATTCCTTATGATGACCCCTCTGATTTTTCGTTCTTTTTCGACACGGGTGGACGAAGACTCTGCTATCTTGCGCCT GAGAGGTTTTATGAGCATGGAGGTGAGATGCAAGTTGCTCAAGATGCACAATTAAGGCCTTCCATGGACATATTTGCAGTAGGATGTCAGGGAGTGAACA CAGTGAAAGCTTCTTTCTATGACAATTGTTGA
AA sequence Show only first row Show all	>Lus10011135 pacid=23167548 polypeptide=Lus10011135 locus=Lus10011135.g ID=Lus10011135.BGIv1.0 annot-version=v1.0 MGNKIARTTQVSASEYYLHDLPSSYNLVLKEILGRGRFFKTVLCKHDEGLVLVKVYFKRGDSIDLREYERHLSFIKDTFRSIDHPHVWPFQFWQETDKAA YLLRQYFFNNLHDRLSTRPFLNPVEKKWLAYQLLLAVKQCHENGICHGDIKCENVLVTSWNWLYLADFASFKPTYIPYDDPSDFSFFFDTGGRRLCYLAP ERFYEHGGEMQVAQDAQLRPSMDIFAVGCQGVNTVKASFYDNC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011135 [exp]	0	1
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009712 [exp]	3.2	0.9687
AT1G58230			binding (.1)		Lus10042867 [exp]	3.3	0.9722
AT1G58230			binding (.1)		Lus10028167 [exp]	5.5	0.9643
AT2G07360			SH3 domain-containing protein ...		Lus10008548 [exp]	5.7	0.9479
AT5G56250		HAP8	hapless 8 (.1.2)		Lus10027098 [exp]	7.9	0.9096
AT5G15680			ARM repeat superfamily protein...		Lus10035142 [exp]	8.0	0.9598
AT1G24300			GYF domain-containing protein ...		Lus10035191 [exp]	8.7	0.9554
AT2G26890		KAM2, GRV2	KATAMARI2, GRAVITROPISM DEFECT...		Lus10033077 [exp]	8.8	0.9536
ATMG01360		ATMG01360.1, CO...	cytochrome oxidase (.1)		Lus10004084 [exp]	11.8	0.9479
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005173 [exp]	12.6	0.9131

Compare expression of checked genes

Lus10011135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.