Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56550 71 / 2e-15 ATOXS3 oxidative stress 3 (.1) AT4G26288 57 / 2e-10 unknown protein AT3G43850 42 / 0.0001 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043039 [exp] 188 / 1e-60 AT5G56550 69 / 1e-14 oxidative stress 3 (.1) Lus10012939 [exp] 115 / 2e-32 AT5G56550 81 / 3e-19 oxidative stress 3 (.1) Lus10034985 [exp] 115 / 2e-32 AT5G56550 81 / 3e-19 oxidative stress 3 (.1) Lus10025837 [exp] 64 / 6e-13 AT5G56550 65 / 2e-13 oxidative stress 3 (.1) Lus10038265 [exp] 64 / 9e-13 AT5G56550 66 / 9e-14 oxidative stress 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G190700 [exp] 75 / 7e-17 AT5G56550 81 / 4e-19 oxidative stress 3 (.1) Potri.018G048100 [exp] 41 / 0.0002 AT5G21940 110 / 4e-29 unknown protein Potri.006G273100 [exp] 40 / 0.0003 AT5G24890 129 / 1e-36 unknown protein Potri.018G008200 [exp] 40 / 0.0006 AT5G24890 131 / 3e-37 unknown protein Potri.009G120300 [exp] 38 / 0.001 AT4G26288 45 / 2e-06 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011137 pacid=23167506 polypeptide=Lus10011137 locus=Lus10011137.g ID=Lus10011137.BGIv1.0 annot-version=v1.0 ATGGAGGAGGATGATCAATTCTGTGAATCAAAATCTGGGAATAAAGAGCTTGAACCATCTTCTTCTTCTTCAATTGGTTCACCTTCAAATTCTTCCTGTT TCTCTGAAGATGATGGAGACGAAGCATCCTCATCCCCACCTTCAACTTCTTCTTCAAATTCCTCTTCATCTTCCGCATTGCACTCAAACAACAACATCAA TGACGATGGCCCTCTCTATGAATTGTCTCAGCTCATGGCCCAACTCCCCATCAAGAGGGGGTTGTCGAGATTCTACCAGGGGAAATCGCAGTCGTACACA TCTCTGTTAGGAAGTGTGAACAGCTTGGAAGATCTGGCGAAGAAGAGAGTGGCTAATTCAGGGAGGATCCTGAAGACGAAGTCCAAATGCAGAAGCTTTT GTTGGGGTTTGGAAAGGCAGAAGCATTGCTACGGTCCTAAGCCTGCAATTTCCAAGAAGGGTTCTTCAACTTCCAGGGGATCATCATCATCCTCATCCTC ATCCTCCTCCTGCTTTACTTCTATGCTGCCAAAAACTCCTGCCCCTTCTTCTTCTGCGGTGTCACTAAATACTGCTACTTAA
AA sequence Show only first row Show all	>Lus10011137 pacid=23167506 polypeptide=Lus10011137 locus=Lus10011137.g ID=Lus10011137.BGIv1.0 annot-version=v1.0 MEEDDQFCESKSGNKELEPSSSSSIGSPSNSSCFSEDDGDEASSSPPSTSSSNSSSSSALHSNNNINDDGPLYELSQLMAQLPIKRGLSRFYQGKSQSYT SLLGSVNSLEDLAKKRVANSGRILKTKSKCRSFCWGLERQKHCYGPKPAISKKGSSTSRGSSSSSSSSSSCFTSMLPKTPAPSSSAVSLNTAT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G56550		ATOXS3	oxidative stress 3 (.1)		Lus10011137 [exp]	0	1
AT5G19120			Eukaryotic aspartyl protease f...		Lus10021939 [exp]	1.0	0.9580
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10034484 [exp]	1.4	0.9461
AT1G30280			Chaperone DnaJ-domain superfam...		Lus10005923 [exp]	1.7	0.9371
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10012517 [exp]	2.4	0.8989
AT2G17020			F-box/RNI-like superfamily pro...		Lus10012518 [exp]	4.5	0.8716
AT2G46550			unknown protein		Lus10030237 [exp]	4.7	0.8364
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10024067 [exp]	5.3	0.9085
AT4G32290			Core-2/I-branching beta-1,6-N-...		Lus10001503 [exp]	6.0	0.8697
AT1G15740			Leucine-rich repeat family pro...		Lus10025751 [exp]	6.7	0.9028
AT1G80920		AtToc12, AtJ8, ...	translocon at the outer envelo...		Lus10041671 [exp]	7.9	0.8953

Compare expression of checked genes

Lus10011137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.