Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29260 251 / 9e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G29270 248 / 1e-82 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT4G25150 238 / 7e-79 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G51260 238 / 1e-78 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT2G38600 180 / 4e-56 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT1G04040 175 / 7e-54 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G44020 169 / 2e-51 HAD superfamily, subfamily IIIB acid phosphatase (.1) AT5G24770 159 / 1e-47 ATVSP2, VSP2 vegetative storage protein 2 (.1.2) AT5G24780 157 / 4e-47 ATVSP1, ATVSP, VSP1 vegetative storage protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043042 [exp] 475 / 3e-172 AT4G29270 251 / 7e-84 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10013478 [exp] 240 / 2e-79 AT4G25150 301 / 1e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10007939 [exp] 237 / 3e-78 AT4G25150 300 / 5e-103 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10014968 [exp] 211 / 6e-68 AT4G29260 231 / 1e-75 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10011774 [exp] 188 / 3e-59 AT1G04040 272 / 8e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10023731 [exp] 187 / 8e-59 AT1G04040 273 / 3e-92 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10017060 [exp] 147 / 3e-44 AT2G38600 216 / 2e-71 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10006849 [exp] 111 / 1e-30 AT4G25150 121 / 9e-35 HAD superfamily, subfamily IIIB acid phosphatase (.1) Lus10038847 [exp] 87 / 3e-21 AT5G51260 97 / 2e-25 HAD superfamily, subfamily IIIB acid phosphatase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152900 [exp] 268 / 8e-91 AT4G29260 292 / 3e-100 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.004G232900 [exp] 256 / 7e-86 AT5G51260 346 / 3e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.001G191000 [exp] 238 / 1e-78 AT4G25150 259 / 8e-87 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.002G257700 [exp] 183 / 2e-57 AT1G04040 317 / 1e-109 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.016G139700 [exp] 177 / 6e-55 AT2G38600 347 / 1e-121 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.006G110900 [exp] 171 / 5e-53 AT2G38600 322 / 2e-112 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G066500 [exp] 171 / 1e-52 AT1G04040 285 / 5e-97 HAD superfamily, subfamily IIIB acid phosphatase (.1) Potri.010G193500 [exp] 95 / 9e-23 AT2G39920 195 / 1e-60 HAD superfamily, subfamily IIIB acid phosphatase (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03767 [flax] [poplar] Acid_phosphat_B HAD superfamily, subfamily IIIB (Acid phosphatase)
Representative CDS sequence Show only first row Show all	>Lus10011140 pacid=23167559 polypeptide=Lus10011140 locus=Lus10011140.g ID=Lus10011140.BGIv1.0 annot-version=v1.0 ATGGCCTTAGCCCCCACCGTCCCGGAATTCATTCTGATTTCATTCCTCTGCCTGTTCAGTCTCGTCTCCGCCTCCCAATCCATAATACGAATGCCTGGAT ACCGCACCACCACCGGCACGGACAACTTCTGCAACGGATGGAGGTTGTCGGTGGAGACCAACAATGCCGGGTCGTGGTTGACCCCGGAGGAATGCCTAGG CTACCGGGTGGAGTACTTCACCGGAGTTCAGTACGCTTGGGATTTGGCGGTTGTTGCGTCAGAATCGGCAGCGTTCGCGAAGAGCATGAAGCTGGGCGGA GACGGAAAGGACGCCTGGGTGTTCGACATTGATGAGACGCTGCTGTCCAATCTCCCGTTCTACGAGAAGTTCGGATACAGCGCGGATGTGTTCAACGTGG ATGCGTGGAACGAGTGGGTGAACTCAACGGCGGCGCCAGCACTGTCAGAAAGTTTGGGTTTGTACAAGGAGCTCAGAGAGCTGGGATTCACAATATTCAT ACTGACAGGGCGAGATGAAAGCCAGAGGAATGCCACAACCTCCAACCTCCTTGGAGCCGGGTTCAGGCACTGGGAAAAGTTAATCTTGAGGGGAGATTCC GATAAGGGGAAGACAGCAGTAGTGTACAAGTCGGAGAAGAGGGAAGAAATAGTGAAACAAGGGTATAGAATCCAAGGCAACTCTGGAGATCAATGGAGTG ACTTGTTAGGCTACGCAGTTGGTGTTAGATCCTTCAAGTACCCTAATCCTTTGTACTACATTGCCTGA
AA sequence Show only first row Show all	>Lus10011140 pacid=23167559 polypeptide=Lus10011140 locus=Lus10011140.g ID=Lus10011140.BGIv1.0 annot-version=v1.0 MALAPTVPEFILISFLCLFSLVSASQSIIRMPGYRTTTGTDNFCNGWRLSVETNNAGSWLTPEECLGYRVEYFTGVQYAWDLAVVASESAAFAKSMKLGG DGKDAWVFDIDETLLSNLPFYEKFGYSADVFNVDAWNEWVNSTAAPALSESLGLYKELRELGFTIFILTGRDESQRNATTSNLLGAGFRHWEKLILRGDS DKGKTAVVYKSEKREEIVKQGYRIQGNSGDQWSDLLGYAVGVRSFKYPNPLYYIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29270			HAD superfamily, subfamily III...		Lus10011140 [exp]	0	1
AT5G52410			unknown protein		Lus10038854 [exp]	8.1	0.7498
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10036834 [exp]	14.5	0.7331
AT4G27960		UBC9	ubiquitin conjugating enzyme 9...		Lus10025212 [exp]	14.8	0.6300
AT1G60670			Protein of unknown function (D...		Lus10012911 [exp]	15.7	0.7394
AT1G49230			RING/U-box superfamily protein...		Lus10033515 [exp]	23.7	0.7200
AT1G60670			Protein of unknown function (D...		Lus10030566 [exp]	37.5	0.7039
AT5G50970			transducin family protein / WD...		Lus10043205 [exp]	48.0	0.7132
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Lus10029780 [exp]	68.8	0.6872
AT3G13670			Protein kinase family protein ...		Lus10013737 [exp]	73.6	0.6654
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10018904 [exp]	94.4	0.6761

Compare expression of checked genes

Lus10011140 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.