Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48320 204 / 3e-68 Thioesterase superfamily protein (.1) AT5G48950 179 / 2e-58 Thioesterase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043043 [exp] 214 / 1e-71 AT1G48320 151 / 4e-47 Thioesterase superfamily protein (.1) Lus10006220 [exp] 199 / 3e-66 AT1G48320 218 / 5e-74 Thioesterase superfamily protein (.1) Lus10036869 [exp] 100 / 3e-28 AT1G48320 124 / 1e-37 Thioesterase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G003800 [exp] 176 / 5e-57 AT1G48320 170 / 1e-54 Thioesterase superfamily protein (.1) Potri.010G003600 [exp] 164 / 3e-52 AT1G48320 197 / 1e-65 Thioesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [flax] [poplar] HotDog PF03061 [flax] [poplar] 4HBT Thioesterase superfamily
Representative CDS sequence Show only first row Show all	>Lus10011142 pacid=23167575 polypeptide=Lus10011142 locus=Lus10011142.g ID=Lus10011142.BGIv1.0 annot-version=v1.0 ATGGAGAATCGTGGAACTGCATCATCAAAAACACAACATATTAGCTCCCCTCTTCGACTTTTGGGGTTCGAATTCGATGAATTCACAGCAAGTAAAGTGA CAGGGCGACTTCTGGTAACTGAAAGGTGTGTGCAGCCGTTCAAAGTGCTGCACGGGGGAGTGTCAGCCCTGATAGCCGAGTCACTAGCTAGCACAGGTGC ATATATAGCATCAGGGTACAAAAGGATCGCAGGAATTCACCTCAGCATTAGCCATTTGAAGCATGCTGATCTCGGCGACCTTATTCTCGCTGAATCCACC CCTGTCAGTGTTGGCAAAACCATTCAGGTGTGGGAGGTGAAATTGTGGAAAGTGAATCAATCGAACTCAGATGGGAAGAAGTCGTTGGTTGCATCATCAA CTGTTACTCTTGTAACCAATTTGAAGGTGCCGGGCGTCCAGGATGACGTCAAAGATGTTTCTGCAATTCTCAAGAGATCTGCAAAACTGTGA
AA sequence Show only first row Show all	>Lus10011142 pacid=23167575 polypeptide=Lus10011142 locus=Lus10011142.g ID=Lus10011142.BGIv1.0 annot-version=v1.0 MENRGTASSKTQHISSPLRLLGFEFDEFTASKVTGRLLVTERCVQPFKVLHGGVSALIAESLASTGAYIASGYKRIAGIHLSISHLKHADLGDLILAEST PVSVGKTIQVWEVKLWKVNQSNSDGKKSLVASSTVTLVTNLKVPGVQDDVKDVSAILKRSAKL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48320			Thioesterase superfamily prote...		Lus10011142 [exp]	0	1
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Lus10042126 [exp]	7.2	0.8502
AT2G47460	MYB	PFG1, ATMYB12	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10001458 [exp]	22.8	0.8454
AT3G61440		ATCYSC1, ARATH;...	BETA-SUBSTITUTED ALA SYNTHASE ...		Lus10014765 [exp]	27.3	0.8120
AT5G03460			unknown protein		Lus10023922 [exp]	29.3	0.8211
AT2G44890		CYP704A1	"cytochrome P450, family 704, ...		Lus10038000 [exp]	31.4	0.7863
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Lus10004210 [exp]	36.6	0.7984
AT4G08900		ARGAH1	arginine amidohydrolase 1, arg...		Lus10000795 [exp]	43.9	0.7720
AT2G18390		HAL, ARL2, TTN5...	TITAN 5, HALLIMASCH, ARF-LIKE ...		Lus10042271 [exp]	45.7	0.7437
AT3G22480		PDF2	prefoldin 2 (.1.2)		Lus10010556 [exp]	49.5	0.7753
AT1G25260			Ribosomal protein L10 family p...		Lus10030073 [exp]	57.9	0.7864

Compare expression of checked genes

Lus10011142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.