Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26270 837 / 0 PFK3 phosphofructokinase 3 (.1) AT5G56630 828 / 0 PFK7 phosphofructokinase 7 (.1) AT4G32840 762 / 0 PFK6 phosphofructokinase 6 (.1) AT4G29220 759 / 0 PFK1 phosphofructokinase 1 (.1) AT5G61580 700 / 0 PFK4 phosphofructokinase 4 (.1.2) AT5G47810 483 / 7e-168 PFK2 phosphofructokinase 2 (.1) AT2G22480 419 / 2e-141 PFK5 phosphofructokinase 5 (.1) AT4G04040 77 / 2e-14 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) AT1G20950 76 / 2e-14 Phosphofructokinase family protein (.1) AT1G76550 76 / 3e-14 Phosphofructokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043044 [exp] 1100 / 0 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10035001 [exp] 917 / 0 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1) Lus10005488 [exp] 763 / 0 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10006032 [exp] 735 / 0 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10008812 [exp] 506 / 4e-176 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10002648 [exp] 404 / 2e-135 AT2G22480 868 / 0.0 phosphofructokinase 5 (.1) Lus10012738 [exp] 401 / 3e-134 AT2G22480 869 / 0.0 phosphofructokinase 5 (.1) Lus10039993 [exp] 188 / 6e-57 AT5G47810 236 / 5e-77 phosphofructokinase 2 (.1) Lus10012925 [exp] 80 / 1e-15 AT4G29210 644 / 0.0 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G069200 [exp] 837 / 0 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.006G152600 [exp] 832 / 0 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 717 / 0 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2) Potri.016G002700 [exp] 521 / 0 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.006G235132 [exp] 412 / 7e-143 AT4G26270 399 / 3e-139 phosphofructokinase 3 (.1) Potri.007G010300 [exp] 389 / 9e-130 AT2G22480 816 / 0.0 phosphofructokinase 5 (.1) Potri.006G235066 [exp] 327 / 4e-110 AT4G26270 331 / 7e-113 phosphofructokinase 3 (.1) Potri.001G079501 [exp] 187 / 3e-56 AT5G61580 235 / 2e-75 phosphofructokinase 4 (.1.2) Potri.001G079450 [exp] 86 / 1e-20 AT5G61580 90 / 7e-23 phosphofructokinase 4 (.1.2) Potri.002G003100 [exp] 81 / 9e-16 AT1G76550 1034 / 0.0 Phosphofructokinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00365 [flax] [poplar] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Lus10011143 pacid=23167532 polypeptide=Lus10011143 locus=Lus10011143.g ID=Lus10011143.BGIv1.0 annot-version=v1.0 ATGGATTCGATTTTTTCTCTACACCACTCGTCGCCATTGATCCCCCTTACCTCTTCCCCTCACCGCTCCACACTAGCCTCTGATTCCGCTAAGCTTTCTC CTTCTTCCCTCACCTTCACTCCTCCTCCTTCCGATTTCAATTCCCTTTCCCGGCTACGATTCATGGCGGCTGCGGCCTCGGCCCCCACCGGCGCTAACGG CCTCACCACCCCCAAGATTGTCAACGGCGAGTACGGCTATGTTCTAGAAGATGTCCCTCATTTGACCGATTACCTTTCTGATCTTCCTACTTATCCCAAT CCTTTGCAAGACAATCCTGCATACTCAGTCGTCAAGCAGTACTTTGTTGATGTAGATGACACCGTTCCGCAAAGGATTGTTGTCCATAAGGATAGTCCTA GAGGAATCCATTTCCGACGTGCTGGACCAAGGCAAAAGGTCTACTTCGAGCCTGATGAAGTCCAAGCTTGTATTGTGACATGTGGTGGTCTCTGCCCTGG ACTCAACACTGTAATCAGAGAAATTGTTTCTACCTTGTATTCCATGTATGGCGTGAAGAGAGTGCTTGGCATTGATGGCGGATACAAGGGCTTCTATGCT CGAAACACAATCGAGCTCACGCCTAAGGTGTTGAATGATATCCACAAACGTGGAGGAACCATCCTTGGGACTTCACGAGGAGGCCATGATACCCAAAAGA TAGTTGACAGCATTCAGGACCGGGGAATTAATCAGGTGTACATAATAGGAGGTGATGGGACACAGAAAGGAGCTTCAGTTATATATGAGGAAGTTAGAAG GCGGGGGCTCAAAGTTGCTGTTGCTGGGATCCCCAAAACAATTGATAACGACATACCGGTGATTGATAAATCATTTGGCTTTGACACTGCGGTTGAAGAG GCTCAACGTGCTATTAATGCTGCTCATGTTGAAGCTGAAAGTGTTGAAAATGGCATAGGTCTTGTGAAGTTGATGGGTCGCTATAGTGGGTTTATTGCCA TGTATGCTACTCTCGCAAGCCGAGATGTAGATTGCTGCCTTATTCCCGAATCACCCTTCTACCTGAAAGGGGAAGGTGGACTCTTTGAGTTCGTTGAGAA ACGGCTCAAAGAAGATGGGCACATGGTTATTGTAATAGCTGAAGGTGCTGGACAGGAGCTCCTTGCCGAGAGCCAACAGATGACAGATGCTTCAGGAAAT AAACTTCTCCAAGACGTTGGGCTGTGGTTATCACAGAATATAAAGGATCATTTGAAAAAACAGAAGATGCCCATAAACCTTAAATATATAGATCCCACAT ACATGATCCGTGCTATTCCAAGCAATGCATCCGACAATGTCTACTGTACACTGCTCGCTCAAAGTTGTGTCCATGGTGCAATGGCTGGCTACACTGGCTA TACATCTGGTCTTGTCAATGGCCGACAAACATACATACCTTTCTACCGAATAACTGAGAAACAGAACAATGTGGTCATCACGGACAGGATGTGGGCTAGG CTCCTATCTTCAACAAATCAGCCAAGCTTTATGTGTCCCAAACTTGTGGCAGAGAAGAGAAAGGAAATGCAAACAAACACGGAGGCACAGCCATCATGCG CCTTGTTGGACGACGGGAACACAGGCGCCGATAAGAAGGCTACAACCAAAGAGGTCAGGAAGTGA
AA sequence Show only first row Show all	>Lus10011143 pacid=23167532 polypeptide=Lus10011143 locus=Lus10011143.g ID=Lus10011143.BGIv1.0 annot-version=v1.0 MDSIFSLHHSSPLIPLTSSPHRSTLASDSAKLSPSSLTFTPPPSDFNSLSRLRFMAAAASAPTGANGLTTPKIVNGEYGYVLEDVPHLTDYLSDLPTYPN PLQDNPAYSVVKQYFVDVDDTVPQRIVVHKDSPRGIHFRRAGPRQKVYFEPDEVQACIVTCGGLCPGLNTVIREIVSTLYSMYGVKRVLGIDGGYKGFYA RNTIELTPKVLNDIHKRGGTILGTSRGGHDTQKIVDSIQDRGINQVYIIGGDGTQKGASVIYEEVRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE AQRAINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLKGEGGLFEFVEKRLKEDGHMVIVIAEGAGQELLAESQQMTDASGN KLLQDVGLWLSQNIKDHLKKQKMPINLKYIDPTYMIRAIPSNASDNVYCTLLAQSCVHGAMAGYTGYTSGLVNGRQTYIPFYRITEKQNNVVITDRMWAR LLSSTNQPSFMCPKLVAEKRKEMQTNTEAQPSCALLDDGNTGADKKATTKEVRK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10011143 [exp]	0	1
AT3G08650			ZIP metal ion transporter fami...		Lus10035606 [exp]	1.4	0.9762
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10041780 [exp]	2.4	0.9589
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040278 [exp]	2.8	0.9516
AT1G70730		PGM2	phosphoglucomutase 2, Phosphog...		Lus10021777 [exp]	4.0	0.9446
AT1G67330			Protein of unknown function (D...		Lus10015780 [exp]	5.1	0.9416
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10020788 [exp]	5.6	0.9295
AT3G52740			unknown protein		Lus10004872 [exp]	5.9	0.9465
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10043044 [exp]	6.6	0.9631
AT1G74940			Protein of unknown function (D...		Lus10011923 [exp]	8.5	0.9436
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10000496 [exp]	9.2	0.9407

Compare expression of checked genes

Lus10011143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.