Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11700 1202 / 0 unknown protein AT4G32920 1149 / 0 glycine-rich protein (.1.2.3) AT5G47020 986 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043045 [exp] 2129 / 0 AT5G11700 1537 / 0.0 unknown protein Lus10007257 [exp] 755 / 0 AT5G47020 1321 / 0.0 unknown protein Lus10005497 [exp] 636 / 0 AT5G11700 1842 / 0.0 unknown protein Lus10007461 [exp] 636 / 0 AT5G11700 1835 / 0.0 unknown protein Lus10000229 [exp] 235 / 3e-71 AT4G32920 182 / 5e-54 glycine-rich protein (.1.2.3) Lus10007259 [exp] 121 / 6e-30 AT5G47020 218 / 2e-64 unknown protein Lus10007258 [exp] 114 / 2e-29 AT5G47020 169 / 1e-49 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G234500 [exp] 1242 / 0 AT5G11700 1793 / 0.0 unknown protein Potri.018G058300 [exp] 1195 / 0 AT5G11700 1779 / 0.0 unknown protein Potri.003G086200 [exp] 1031 / 0 AT5G47020 1620 / 0.0 unknown protein Potri.001G148300 [exp] 1025 / 0 AT5G47020 1624 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10011144 pacid=23167555 polypeptide=Lus10011144 locus=Lus10011144.g ID=Lus10011144.BGIv1.0 annot-version=v1.0 ATGGCTCCTGCAGCAGCTCCTTTGTCACACCTTCTGTTCTCATTCGTCTTCGGCTTCTGGTTCCTGTCTACTCCTTGCATGAGTGTTTCCGATCTGGATG ATGGCGGATTCTCCATCGCTGGCTTCGATTCTGTTTTCTATCCTGGCGACTACAGTCCTCCGTCGCCCCCTGCGCCGCCTCCGCCTCCGCTCCCGCCGTC TGTGACCTGTGAGGGGGATCTCAAAGGTGTAGGCTCCTTAGACTCCGTGTGCAAGCTGAGTTCGTCTTTGAATTTCACTCATGACGTGTACATAGGAGGG GGCGGGTCATTGGTCTTGCTTCCTGATGTCGTTTTGAGCTGCGCAGTCCGCGGCTGTGCTATTTTGGTCAGTGTCGGAGATGAGATCAGGATGGGGGAGA AGGCGGCGATAATTGCTGGGACTGTCTGGCTCACTTCTCAGAATGCAACTTTTAGTTACGGCTCCTTGATTAACTCTACTGCCTTGGCTGGTGCGCCTCC TGAAGAGACCAGTGGAACTCCTGGTGGCGTTCAAGGAGCTGGTGGTGGATATGGAGGAAGGGGAGCTAGCTGTGTCTCGGATAATACCAAGTTGCCTGAG GATGTGTGGGGAGGGGACGCTTATGCGTGGGCGGACTTGAACGCTCCTTGGAGTTATGGTAGTAAAGGTGGAACTACTAGTAAGGAGGAGAATTATGGAG GAGAAGGAGGCGGAAGGATTGGAATGAATATTACCAACTCAATTGAGCTTTATGGAACTTTGTTGGCGGAAGGTGGAGATGGTGGTATAAAGGGTGGAGG GGGTTCAGGTGGCAGCATCCGTATCATCGGTCATAGAATGGTAGGGGATGGTACATTAAGCGCTTCTGGTGGTAACGGATTTGCTGGGGGTGGCGGTGGA AGAGTTTCTGTTGATGTTTTCAGCAGACATGATGATATATTGATCTTTGTCCATGGTGGAAGGAGTCTTGGATGCACCGAAAATTCAGGTGCTGCAGGCA CATATTATGATGCTGTTCCTCGGAGTCTTACAGTTAATAACAATAACATGTCCACCAACACTGATACACTTCTGTTGGAATTTCCCAAGCAGCCACTTTG GACCAATGTTAACATTCAGAATCGTGCGAGGGCTTCTGTTCCTTTATTTTGGAGTCGGGTTCAGGTCCATGGACAAATCAGTTTATCCAGTGAGGCAGTG ATGAGCTTTGGCCTTCCGCATTATGCGACATCTGAATTTGAGTTGATGGCTGAAGAACTTCTAATGAGCAACTCAGTTGTTAAGGCAGATGGAGGTGGTG ATGAGCTTGTGGCTACTTCTGCTCTGGAGGCTAGCAACCTAGTTGTTCTCAAGGAATCTTCAGCAGTACACTCCAATGCAAATCTGGAAGTTCATGGGCA AGGCTTTTTTAATTTGTCTGGACCAGGAAACATGATTGAAGCTCAAAGGCTAATTCTGTCCTTGTTTTTTGGTATCTATGTTGAACCTGGATCTGTTCTT AGAGGCCCCTTGAAGGATGCAGATGATCGTAGCATGATGCCACGGCTCTACTGTGAAGATCGAGAATGCCCAAGGGAACTGATTCATCCACCTGAAGATT GTAATATGAACTCTTCATTGGCCTTTACTCTCCAGATTTGTCGAGTTGAAGAGGTTATTGTTGGAGGCTCAGTATCGGGATCTGTTGTTCATTTTCGTTC AGTCAGAAATATTATTGTCAATTCTTCTGGAGTAATCAGTGCTTCTGGATTAGGATGTACTGGTGGTATTGGTAGAGGAAACATTTTTGAAAATGGTCTT GGTGGTGGAGGTGGACATGGAGGAAAAGGTGGTGAAGGATATTATAATGGGAGTTTTGTGGATGGTGGTGTTGCTTATGGAGATGCTGAATTGCCTTGTG AACTTGGAAGCGGCAGTGGAAATTATAGTTTAGCTGGATCGACTGCAGGCGGTGGTATAATTGTGATCGGTTCGATGGAGCATTCGCTGTCCAGTTTGTC TGTTTTTGGCTCACTTAGAGCAGATGGTGAAAGCTTCGGAGAGGACCCAAAGAAAGATGGTGGAATGACTTCAAGCATAGGTCCTGGAGGTGGTGCTGGT GGAACTATTCTTTTATTTGTGCATTCAGTCACGCTTGGGAATTCTTCTGCTATTTCCACCATGGGAGGGCATGGAAGTCCTAACGGTGGAGGTGGTGGAG GTGGTGGAAGGGTTCACTTCCATTGGGCCAATATTCCTTCGGGAGATGAGTATATGCCAATAGCAAGCTCAAATGGGAGCATTCAAACTGGAAAGCTGGA GGAAGTATTTAGAACAGTTAGGAAAGATGGTGGCAAGCTCTGGCCTCCTTTTGAGCCCCATTTGGTACGTGTACACGGCATTTATTTGGGGTTTGACGGA TTTGACGGTTCACATCTTCCAAGCATGGATTTTAGAGGGGGGCTTGGTAGAGGCCAGGGTCATACAGGAGATGATGGAACTGTTACTGGGAAGGCCTGTC CGGAAGGGCTCTATGGTATCTTCTGCGAGGAGTGTCCCTTGGGTACATTCAAGAATGTCAGTGGATCTGATAAAGCTCTGTGTTATAGTTGCCCATTCTA CGAGCTACCAAGTCGTGCCATATATGTCACTGTCCGCGGTGGTGTTACTGAAAGACCTTGTCCATACAAGTGCATGACAGACAGATATCACATGCCAAAC TGTTATACAACCCTAGAGGAGTTGGTATACACTTTTGGCGGGCCGTGGTTGTTTAGTCTTATTCTATTGGGTCTACTCATCCTGTTAACTCTAGTGCTTA GTGTTGCACGAATGAAATATGTTGCGGGGAAGGAATTACCGACTCTTGTGCCTGCTCAGCGGGGTTCTCGAATAGATCACTCGTTCCCTTTCCTCGAGTC ACTGAATGAGGTATTGGAAACAAACAGAACTGAAGAATCGCGGAGTCATGTGCATAGGATGTTTTTTATGGGGGCAAATACTTTCAGTGAACCTTGGCAT TTAACTCATTCTCCTCCTAAACAAGTTATTGAGATTGTGTATGAGGATGCGTTCAACAGGTTTGTAGATGAGATCAATGGTTTGGCTGCATATCAGTGGT GGCAAGGATCTGTTTATAGCATCCTTTCTGTTCTCGCATATCCACTTGCCTACTCCTGGCTACAGCAGTGTAGGAAAAGGAAACTACAGCAGCTGCGTGA TTTTGTACGTTCAGAATATGATCATGCTTGCTTACGGTCTTGCCGTTCCCGTGCTCTTTACGAAGGACTCAAGGTGGGAGCCACTTTGGACCTAATGCTT GCATACTTGGACTTTTTCCTTGGCGGAGATGAGAAGAGACCTGATCTTCCTCCTAGTCTTCATCAGAGATTTCCCATGACTTTAGTTTTGGGTGGAGATG GAAGTTACATGGCACCTTTCTCACTTCACAATGATAATATTCTCACTAGTCTCATGAGCCAGGCTGTTCCACCAACCATCTGGTATAGGCTAGTGGCTGG TCTTAATGCTCAATTACGTTTGGTTCAACGTGGACGCTTGAAATTTACATTTCTTCGAGTTATTTCCTGGATTGAAACTCATGCGAATCCTACGTTGACT ACCTATGGAATACGTGTGGATCTTGCTTGGTTTCAGCCCACTGCCTCTGGTTATTGTCAGTTTGGACTTGTAGTATATGCCACTGGAGATAATAATACAC TGCAGTCAGGCAGCGGGAGTGGGATTGTATGTTCACCTCTGGCGAACAGGGGTGATCAAAGGCAATATCCGAAGGGTACCGAAGCACTGCTGACACGTAA AGTATGTGGAGAAGGAATTTTGAATTCAAGTACTCTACAGACATTGGGGGTGCAGGACCTTGTGGGTTTGCTGATATCTATGCTTCTTCTAGGAGATATT AGCTTAGTGATGCTTAGTCTGCTACAGATGTATTCGATATCGCTACTCAACTTCCTATTAGTTTTGTTTATTCTTCCTCTGGGGATATTGTTTCCATTCC CTGCTGGGATCAGTGCTTTGTTCAGTCATGGACCAAGACGTTCGGCAGGTCTTTCTCGTCTATATGCTTTGTGGAATTTTACATCCTTGATCAACGTTGT GGTAGCATTAGTATGCGGATTTGTTCATTACATGCGTCGCTCAAGTGAAAGCCACCTCAACTTGCCGTCCTGGAATTTTAGCATGGATGATAGCGAGTGG TGGATACTTCCATGTGGGCTGTTGGTTTGTAAGATTGTGCAAGCACGGCTGATTGATTGTCACATTGCTAACCAAGAGATCCAAGATTACTCCTTGTACA GTAACGATCCAGGAGTGTTCTGGCAAGCTTGA
AA sequence Show only first row Show all	>Lus10011144 pacid=23167555 polypeptide=Lus10011144 locus=Lus10011144.g ID=Lus10011144.BGIv1.0 annot-version=v1.0 MAPAAAPLSHLLFSFVFGFWFLSTPCMSVSDLDDGGFSIAGFDSVFYPGDYSPPSPPAPPPPPLPPSVTCEGDLKGVGSLDSVCKLSSSLNFTHDVYIGG GGSLVLLPDVVLSCAVRGCAILVSVGDEIRMGEKAAIIAGTVWLTSQNATFSYGSLINSTALAGAPPEETSGTPGGVQGAGGGYGGRGASCVSDNTKLPE DVWGGDAYAWADLNAPWSYGSKGGTTSKEENYGGEGGGRIGMNITNSIELYGTLLAEGGDGGIKGGGGSGGSIRIIGHRMVGDGTLSASGGNGFAGGGGG RVSVDVFSRHDDILIFVHGGRSLGCTENSGAAGTYYDAVPRSLTVNNNNMSTNTDTLLLEFPKQPLWTNVNIQNRARASVPLFWSRVQVHGQISLSSEAV MSFGLPHYATSEFELMAEELLMSNSVVKADGGGDELVATSALEASNLVVLKESSAVHSNANLEVHGQGFFNLSGPGNMIEAQRLILSLFFGIYVEPGSVL RGPLKDADDRSMMPRLYCEDRECPRELIHPPEDCNMNSSLAFTLQICRVEEVIVGGSVSGSVVHFRSVRNIIVNSSGVISASGLGCTGGIGRGNIFENGL GGGGGHGGKGGEGYYNGSFVDGGVAYGDAELPCELGSGSGNYSLAGSTAGGGIIVIGSMEHSLSSLSVFGSLRADGESFGEDPKKDGGMTSSIGPGGGAG GTILLFVHSVTLGNSSAISTMGGHGSPNGGGGGGGGRVHFHWANIPSGDEYMPIASSNGSIQTGKLEEVFRTVRKDGGKLWPPFEPHLVRVHGIYLGFDG FDGSHLPSMDFRGGLGRGQGHTGDDGTVTGKACPEGLYGIFCEECPLGTFKNVSGSDKALCYSCPFYELPSRAIYVTVRGGVTERPCPYKCMTDRYHMPN CYTTLEELVYTFGGPWLFSLILLGLLILLTLVLSVARMKYVAGKELPTLVPAQRGSRIDHSFPFLESLNEVLETNRTEESRSHVHRMFFMGANTFSEPWH LTHSPPKQVIEIVYEDAFNRFVDEINGLAAYQWWQGSVYSILSVLAYPLAYSWLQQCRKRKLQQLRDFVRSEYDHACLRSCRSRALYEGLKVGATLDLML AYLDFFLGGDEKRPDLPPSLHQRFPMTLVLGGDGSYMAPFSLHNDNILTSLMSQAVPPTIWYRLVAGLNAQLRLVQRGRLKFTFLRVISWIETHANPTLT TYGIRVDLAWFQPTASGYCQFGLVVYATGDNNTLQSGSGSGIVCSPLANRGDQRQYPKGTEALLTRKVCGEGILNSSTLQTLGVQDLVGLLISMLLLGDI SLVMLSLLQMYSISLLNFLLVLFILPLGILFPFPAGISALFSHGPRRSAGLSRLYALWNFTSLINVVVALVCGFVHYMRRSSESHLNLPSWNFSMDDSEW WILPCGLLVCKIVQARLIDCHIANQEIQDYSLYSNDPGVFWQA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11700			unknown protein		Lus10011144 [exp]	0	1
AT5G49970		PDX3, ATPPOX	HOMOLOG OF YEAST PYRIDOXINE AU...		Lus10002098 [exp]	4.9	0.8786
AT4G38730			Protein of unknown function (D...		Lus10042393 [exp]	6.9	0.8443
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Lus10039491 [exp]	7.1	0.8413
AT3G56680			Single-stranded nucleic acid b...		Lus10043439 [exp]	7.5	0.8366
AT1G22620		ATSAC1	suppressor of actin 1, Phospho...		Lus10014827 [exp]	7.6	0.9073
AT3G11440	MYB	AtMYB65	myb domain protein 65 (.1)		Lus10026142 [exp]	7.9	0.8980
AT1G33360			ATP-dependent Clp protease (.1...		Lus10000933 [exp]	8.1	0.8553
AT3G09850			D111/G-patch domain-containing...		Lus10036327 [exp]	10.4	0.8590
AT2G26510		PDE135	pigment defective embryo 135, ...		Lus10002787 [exp]	11.4	0.8853
AT1G07530	GRAS	SCL14, ATGRAS2	GRAS \(GAI, RGA, SCR\) 2, ARAB...		Lus10023404 [exp]	12.0	0.8436

Compare expression of checked genes

Lus10011144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.