Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49510 285 / 3e-99 PFD3, PDF3 prefoldin 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043046 [exp] 332 / 9e-118 AT5G49510 302 / 3e-106 prefoldin 3 (.1.2) Lus10017066 [exp] 318 / 1e-112 AT5G49510 308 / 3e-108 prefoldin 3 (.1.2) Lus10037784 [exp] 230 / 9e-78 AT5G49510 221 / 3e-74 prefoldin 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G147600 [exp] 291 / 8e-102 AT5G49510 293 / 2e-102 prefoldin 3 (.1.2) Potri.008G103400 [exp] 285 / 4e-99 AT5G49510 295 / 6e-103 prefoldin 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0200 [flax] [poplar] Prefoldin PF02996 [flax] [poplar] Prefoldin Prefoldin subunit
Representative CDS sequence Show only first row Show all	>Lus10011145 pacid=23167521 polypeptide=Lus10011145 locus=Lus10011145.g ID=Lus10011145.BGIv1.0 annot-version=v1.0 ATGGCATCGTCATCTTCATCATCGTCAGCGGCGACGGAGAGAAGAGGGATTCCTGGAGCTCAGTTCGTGGAAGATGTGGAGATATATCTTACACAATCTG GCCTAGATGCCAACTCTGCCCTAACTTTCCTCCAAGAAAGACTTCAGCAGTATAGAGTGGTGGAGATGAAACTGCTTGCTCAGCAACGGGATCTTCAGGC AAAGATCCCGGACATTGAGAAATGTTTGGATGTGGTTGCCACATTGCAGTCTAAGAACGGTACTGGTGAGGCACTTGTTACTGACTTTGAAATAGCTGAA GGCATCTATTCTCGGGCACGTATTGATGAAAGCAACTCAGTTTGTTTGTGGCTGGGAGCAAATGTCATGTTGGAGTATTCATGTGAAGAGGCCACGGCTA TGCTGCAGAAGAATTTAGAGAATGCTAAAGCTAGTTTGGAAGTCCTTATTGCTGATCTACAGTTCCTAAGGGATCAAGTTACAGTAACGCAGGTGACAGT TGCACGCGTGTATAACTGGGATGTTCATCAGCGCAGATTGAGACAGGCAACTGCTGCTGTTTAA
AA sequence Show only first row Show all	>Lus10011145 pacid=23167521 polypeptide=Lus10011145 locus=Lus10011145.g ID=Lus10011145.BGIv1.0 annot-version=v1.0 MASSSSSSSAATERRGIPGAQFVEDVEIYLTQSGLDANSALTFLQERLQQYRVVEMKLLAQQRDLQAKIPDIEKCLDVVATLQSKNGTGEALVTDFEIAE GIYSRARIDESNSVCLWLGANVMLEYSCEEATAMLQKNLENAKASLEVLIADLQFLRDQVTVTQVTVARVYNWDVHQRRLRQATAAV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10011145 [exp]	0	1
AT5G63220			unknown protein		Lus10036505 [exp]	1.0	0.9075
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10039931 [exp]	6.7	0.8885
AT2G24990			Serine/threonine-protein kinas...		Lus10002728 [exp]	8.9	0.8892
AT4G17486			PPPDE putative thiol peptidase...		Lus10033030 [exp]	8.9	0.8791
AT2G34520		RPS14	mitochondrial ribosomal protei...		Lus10034657 [exp]	10.4	0.8764
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Lus10014783 [exp]	12.5	0.8699
AT2G20450			Ribosomal protein L14 (.1)		Lus10008246 [exp]	14.0	0.8838
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Lus10001912 [exp]	14.4	0.8697
AT3G52905			Polynucleotidyl transferase, r...		Lus10008496 [exp]	15.5	0.8657
AT2G18110			Translation elongation factor...		Lus10037618 [exp]	16.1	0.8862

Compare expression of checked genes

Lus10011145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.