Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06510 818 / 0 SFR2, ATSFR2 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) AT1G26560 121 / 4e-29 BGLU40 beta glucosidase 40 (.1) AT3G60120 120 / 2e-28 BGLU27 beta glucosidase 27 (.1) AT3G60130 118 / 2e-28 BGLU16 beta glucosidase 16 (.1.2.3) AT2G25630 118 / 4e-28 BGLU14 beta glucosidase 14 (.1) AT3G60140 117 / 2e-27 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT5G36890 115 / 5e-27 BGLU42 beta glucosidase 42 (.1.2) AT5G44640 114 / 1e-26 BGLU13 beta glucosidase 13 (.1) AT2G44490 114 / 1e-26 BGLU26, PEN2 PENETRATION 2, BETA GLUCOSIDASE 26, Glycosyl hydrolase superfamily protein (.1) AT5G42260 112 / 7e-26 BGLU12 beta glucosidase 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043048 [exp] 1160 / 0 AT3G06510 767 / 0.0 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) Lus10006100 [exp] 117 / 1e-31 AT3G06510 55 / 2e-10 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) Lus10010837 [exp] 117 / 1e-31 AT3G06510 55 / 2e-10 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) Lus10030186 [exp] 117 / 1e-31 AT3G06510 55 / 2e-10 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) Lus10022976 [exp] 117 / 1e-31 AT3G06510 55 / 2e-10 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) Lus10024065 [exp] 127 / 7e-31 AT5G44640 511 / 2e-178 beta glucosidase 13 (.1) Lus10008503 [exp] 120 / 1e-28 AT2G44450 489 / 2e-169 beta glucosidase 15 (.1) Lus10004654 [exp] 120 / 2e-28 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10037988 [exp] 117 / 2e-27 AT5G54570 741 / 0.0 beta glucosidase 41 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G149500 [exp] 1029 / 0 AT3G06510 832 / 0.0 SENSITIVE TO FREEZING 2, Glycosyl hydrolase superfamily protein (.1.2) Potri.004G040700 [exp] 120 / 1e-28 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.004G019366 [exp] 120 / 2e-28 AT1G61820 608 / 0.0 beta glucosidase 46 (.1.3) Potri.008G094200 [exp] 119 / 3e-28 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.001G015100 [exp] 113 / 3e-26 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.010G159900 [exp] 112 / 4e-26 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.001G227300 [exp] 111 / 1e-25 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227200 [exp] 110 / 2e-25 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.004G019800 [exp] 109 / 4e-25 AT4G21760 658 / 0.0 beta-glucosidase 47 (.1) Potri.001G409900 [exp] 108 / 7e-25 AT5G54570 791 / 0.0 beta glucosidase 41 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10011147 pacid=23167554 polypeptide=Lus10011147 locus=Lus10011147.g ID=Lus10011147.BGIv1.0 annot-version=v1.0 ATGGCGTTCTTGACTCTCGTCGTGTCGGCCACCAAGGTCGCCGGCGTCTTAGTAAGCCTCACCGTCGCTTCCAACGCCATCTCTTTCTGGCGTTTCCAGA AGAAGAATCTCAAGTCTTTCGAACCCGGTATTGACGAGACCTCAGAGATTCTGGCCGCTTTTAATGTCGACGGAGGAGAAAGTGAGTTTTTCTTTGGTTT GGCAACCGCACCTGCTCACGTTGAGGACAGGCTTAACGATGCTTGGCTCCAGTTTGCCGAAGAGACTCCAGCTGACGTATCACTTCCACAGGGAGACCTG CAACCTGCTGATGCTGTTCTCGTTTCAGATGGAGAGGACGGGGGGTCTCAACAAGCTTCACTTTCTCCAAAAGAGCTTGCTAAGGTTGCTAAAAGGAAGA AGTCAATTAAAGTTTCTATGGAAGCTATGATTAGAGGGTTTGAGAAGTACACAGAAGAAGAAGATAAAGAAGAAGACAAAGAAGAAGAAGAAGTTCCTTT GCCAAGTGAAGAATTCCATCACAATGTAGCAGCATGGCACAATGTTCCCCACCCAGAGGAGAGACTAAGATTTTGGTCTGATCCTGATACAGAACTGAAA CTAGCTAAAGATGCTGGTGTTACCGTCTTCAGAATGGGAATAGATTGGACTCGAATTATGCCAGAGGAGCCTGTCAATGGCCTTAAAGATGCTGTTAATT TTGCTGCACTGGAGCGGTACAAGTGGATAATTTCAAGGGTCCATTCCTATGGAATGAAGGTGATGTTGACTCTTTTCCACCATTCGTTGCCACCTTGGGC TGGTGAGTATGGTGGATGGAAGCTGGAAAAGACTGTTGATTATTTTATGGACTTCACCAGGCTTGTTGTCGATGCTGTATCAGAGCTAGTAGACTACTGG ATTACATTTAACGAGCCTCATATTTTCTGTATGCTAACCTACTGCGCTGGTGCATGGCCTGGTGGTCACCCTGATATGCTGGAAGTTGCAACTTCTGCTT TACCATTTGGAGTTTTCAACATGGCAATGAACTGGATAGCTTTAGCACACTCAAAATCCTACGCCTTTATTCATGAAAACTGTACAAATCCAGTGGTTGG GGTAGCACATCATGTGTCATTTATGAGACCTTATGGTCTCTTTGATGTTGCCGCGGTTCAGTTTGCAAACTCCCGTACAATATTCCCCTTCATTGATAGT ATAGCAGAGAAGCTTGATTATATAGGCATCAACTACTACGGCCAGGAAGTGGTTTCAGGTGTCGGGCTGAAGTTAGTAGAGACTGATGAATACAGTGAAT CGGGACGAGGGGTATATCCCGATGGCTTATTTCGTGTTCTACTTCAGTTCCACGAGAGATACAAACATTTAAATGTTCCCTTCATCATCACCGAAAATGG AGTCGCGGATGAAACAGATGTTATCCGGAGGCCTTATCTGTTGGAACACTTGCTTGCAGTCTACGCAGCCATGATTTTGGGCACTCCTGTGCTTGGTTAC CTGTTCTGGACCATTTCTGACAACTGGGAGTGGGCTGATGGATATGGTCCCAAGTTCGGACTCGTAGCTGTTGATCGGAACAATAATCTTGCACGGAATC CTCGTCCTTCTTACCACCTTTTCTCCAAGGTGGCTAGATCAGGTAAGATTACAAGGGAAGACAGGGACCAGGCTTGGGGTGAGCTTCAGAGTGCTGCCAA ACAGAAGAAAACCAGACCATTTTACCGTGCGGTGAATAAGTCCGGCCTAATGTATGCAGGTGGACTTGATGAACCAATTGAGAGGGAGTACATTGCAAGA GATTGGCGATTTGGACATTATGAGATGGAAGGTCTGCAAGACCCATTAAGCCGGCTGTCAAGATGTGTTCTTCGACCATTCATCAGGAAAAGAAAAGGAA GAAGAAATGCTCAACCTCTTGTTCTTCAGCCTCTTGCATGA
AA sequence Show only first row Show all	>Lus10011147 pacid=23167554 polypeptide=Lus10011147 locus=Lus10011147.g ID=Lus10011147.BGIv1.0 annot-version=v1.0 MAFLTLVVSATKVAGVLVSLTVASNAISFWRFQKKNLKSFEPGIDETSEILAAFNVDGGESEFFFGLATAPAHVEDRLNDAWLQFAEETPADVSLPQGDL QPADAVLVSDGEDGGSQQASLSPKELAKVAKRKKSIKVSMEAMIRGFEKYTEEEDKEEDKEEEEVPLPSEEFHHNVAAWHNVPHPEERLRFWSDPDTELK LAKDAGVTVFRMGIDWTRIMPEEPVNGLKDAVNFAALERYKWIISRVHSYGMKVMLTLFHHSLPPWAGEYGGWKLEKTVDYFMDFTRLVVDAVSELVDYW ITFNEPHIFCMLTYCAGAWPGGHPDMLEVATSALPFGVFNMAMNWIALAHSKSYAFIHENCTNPVVGVAHHVSFMRPYGLFDVAAVQFANSRTIFPFIDS IAEKLDYIGINYYGQEVVSGVGLKLVETDEYSESGRGVYPDGLFRVLLQFHERYKHLNVPFIITENGVADETDVIRRPYLLEHLLAVYAAMILGTPVLGY LFWTISDNWEWADGYGPKFGLVAVDRNNNLARNPRPSYHLFSKVARSGKITREDRDQAWGELQSAAKQKKTRPFYRAVNKSGLMYAGGLDEPIEREYIAR DWRFGHYEMEGLQDPLSRLSRCVLRPFIRKRKGRRNAQPLVLQPLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10011147 [exp]	0	1
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10039748 [exp]	1.7	0.9586
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10018528 [exp]	3.9	0.9338
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10036636 [exp]	4.0	0.9345
AT5G51110			Transcriptional coactivator/pt...		Lus10014182 [exp]	4.5	0.9265
AT5G58330			lactate/malate dehydrogenase f...		Lus10037935 [exp]	7.1	0.9247
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10032131 [exp]	7.5	0.9072
AT5G08050			Protein of unknown function (D...		Lus10021151 [exp]	7.7	0.9083
AT5G17870		PSRP6	plastid-specific 50S ribosomal...		Lus10007237 [exp]	7.9	0.9105
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Lus10014769 [exp]	9.2	0.8983
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Lus10038575 [exp]	10.6	0.9115

Compare expression of checked genes

Lus10011147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.